Results 1 - 20 of 58 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28257 | 5' | -44.3 | NC_005902.1 | + | 107307 | 0.66 | 0.999999 |
Target: 5'- -cGUUGucAACGCUUUaGGAGUUAAGg -3' miRNA: 3'- aaUAACuaUUGCGGAAcCCUCAAUUU- -5' |
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28257 | 5' | -44.3 | NC_005902.1 | + | 36343 | 0.66 | 0.999999 |
Target: 5'- gUAUUGAcgaUAACcCCUUaGGAGUUAAGg -3' miRNA: 3'- aAUAACU---AUUGcGGAAcCCUCAAUUU- -5' |
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28257 | 5' | -44.3 | NC_005902.1 | + | 16091 | 0.66 | 0.999999 |
Target: 5'- -cAUUGuuaauaAUGAUGCCUUaGGAGUUAAu -3' miRNA: 3'- aaUAAC------UAUUGCGGAAcCCUCAAUUu -5' |
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28257 | 5' | -44.3 | NC_005902.1 | + | 20197 | 0.66 | 0.999999 |
Target: 5'- -cAUUGuuaucaAUGAUGCCUUaGGAGUUAAc -3' miRNA: 3'- aaUAAC------UAUUGCGGAAcCCUCAAUUu -5' |
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28257 | 5' | -44.3 | NC_005902.1 | + | 55225 | 0.66 | 0.999999 |
Target: 5'- gUUAUcGAUGACGCCUUaGaAGUUAAAg -3' miRNA: 3'- -AAUAaCUAUUGCGGAAcCcUCAAUUU- -5' |
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28257 | 5' | -44.3 | NC_005902.1 | + | 137997 | 0.66 | 0.999999 |
Target: 5'- ---cUGAcGAUGCCUUaGGAGUUAu- -3' miRNA: 3'- aauaACUaUUGCGGAAcCCUCAAUuu -5' |
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28257 | 5' | -44.3 | NC_005902.1 | + | 159609 | 0.66 | 0.999999 |
Target: 5'- -cAUUGAUAAUGCCUUagaaauuaaaGGGuuaaauGUUAAGa -3' miRNA: 3'- aaUAACUAUUGCGGAA----------CCCu-----CAAUUU- -5' |
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28257 | 5' | -44.3 | NC_005902.1 | + | 18829 | 0.66 | 0.999998 |
Target: 5'- aUGUUGuaaacAAUGCCUUaGGAGUUAAc -3' miRNA: 3'- aAUAACua---UUGCGGAAcCCUCAAUUu -5' |
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28257 | 5' | -44.3 | NC_005902.1 | + | 94974 | 0.66 | 0.999998 |
Target: 5'- -----aAUAAUGCCUUaGGAGUUAAGg -3' miRNA: 3'- aauaacUAUUGCGGAAcCCUCAAUUU- -5' |
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28257 | 5' | -44.3 | NC_005902.1 | + | 25220 | 0.67 | 0.999996 |
Target: 5'- -cAUUGAcAACGCCUU--GAGUUAAAa -3' miRNA: 3'- aaUAACUaUUGCGGAAccCUCAAUUU- -5' |
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28257 | 5' | -44.3 | NC_005902.1 | + | 159836 | 0.67 | 0.999996 |
Target: 5'- -----aAUGAUGCCUUaGGAGUUAAGg -3' miRNA: 3'- aauaacUAUUGCGGAAcCCUCAAUUU- -5' |
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28257 | 5' | -44.3 | NC_005902.1 | + | 174976 | 0.67 | 0.999995 |
Target: 5'- -----aAUGAUGCCUUaGGAGUUAAAu -3' miRNA: 3'- aauaacUAUUGCGGAAcCCUCAAUUU- -5' |
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28257 | 5' | -44.3 | NC_005902.1 | + | 94459 | 0.67 | 0.999992 |
Target: 5'- gUUAUaGAcAAUGCCUUaGGAGUUAAGa -3' miRNA: 3'- -AAUAaCUaUUGCGGAAcCCUCAAUUU- -5' |
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28257 | 5' | -44.3 | NC_005902.1 | + | 95552 | 0.67 | 0.999992 |
Target: 5'- ----cGAUGAUGCCUUaaGAGUUAAAg -3' miRNA: 3'- aauaaCUAUUGCGGAAccCUCAAUUU- -5' |
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28257 | 5' | -44.3 | NC_005902.1 | + | 169238 | 0.67 | 0.999989 |
Target: 5'- -----aAUGAUGCCUUaGGAGUUAAAg -3' miRNA: 3'- aauaacUAUUGCGGAAcCCUCAAUUU- -5' |
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28257 | 5' | -44.3 | NC_005902.1 | + | 78794 | 0.67 | 0.999989 |
Target: 5'- aUUGUUGAUAACaCCUUaaGAGUUAAAg -3' miRNA: 3'- -AAUAACUAUUGcGGAAccCUCAAUUU- -5' |
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28257 | 5' | -44.3 | NC_005902.1 | + | 100913 | 0.67 | 0.999985 |
Target: 5'- aUUAUUGAUGACGCau--GGAGUUu-- -3' miRNA: 3'- -AAUAACUAUUGCGgaacCCUCAAuuu -5' |
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28257 | 5' | -44.3 | NC_005902.1 | + | 91086 | 0.67 | 0.999985 |
Target: 5'- aUUAUUGAUGAUGUgU--GGAGUUAAAg -3' miRNA: 3'- -AAUAACUAUUGCGgAacCCUCAAUUU- -5' |
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28257 | 5' | -44.3 | NC_005902.1 | + | 83831 | 0.68 | 0.999979 |
Target: 5'- aUGUUGAUGAUaUCUUaGGAGUUAAAg -3' miRNA: 3'- aAUAACUAUUGcGGAAcCCUCAAUUU- -5' |
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28257 | 5' | -44.3 | NC_005902.1 | + | 118217 | 0.68 | 0.999979 |
Target: 5'- -cAUUGAcAAUGCUUUaGGAGUUAAAa -3' miRNA: 3'- aaUAACUaUUGCGGAAcCCUCAAUUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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