miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28257 5' -44.3 NC_005902.1 + 107307 0.66 0.999999
Target:  5'- -cGUUGucAACGCUUUaGGAGUUAAGg -3'
miRNA:   3'- aaUAACuaUUGCGGAAcCCUCAAUUU- -5'
28257 5' -44.3 NC_005902.1 + 36343 0.66 0.999999
Target:  5'- gUAUUGAcgaUAACcCCUUaGGAGUUAAGg -3'
miRNA:   3'- aAUAACU---AUUGcGGAAcCCUCAAUUU- -5'
28257 5' -44.3 NC_005902.1 + 16091 0.66 0.999999
Target:  5'- -cAUUGuuaauaAUGAUGCCUUaGGAGUUAAu -3'
miRNA:   3'- aaUAAC------UAUUGCGGAAcCCUCAAUUu -5'
28257 5' -44.3 NC_005902.1 + 20197 0.66 0.999999
Target:  5'- -cAUUGuuaucaAUGAUGCCUUaGGAGUUAAc -3'
miRNA:   3'- aaUAAC------UAUUGCGGAAcCCUCAAUUu -5'
28257 5' -44.3 NC_005902.1 + 55225 0.66 0.999999
Target:  5'- gUUAUcGAUGACGCCUUaGaAGUUAAAg -3'
miRNA:   3'- -AAUAaCUAUUGCGGAAcCcUCAAUUU- -5'
28257 5' -44.3 NC_005902.1 + 137997 0.66 0.999999
Target:  5'- ---cUGAcGAUGCCUUaGGAGUUAu- -3'
miRNA:   3'- aauaACUaUUGCGGAAcCCUCAAUuu -5'
28257 5' -44.3 NC_005902.1 + 159609 0.66 0.999999
Target:  5'- -cAUUGAUAAUGCCUUagaaauuaaaGGGuuaaauGUUAAGa -3'
miRNA:   3'- aaUAACUAUUGCGGAA----------CCCu-----CAAUUU- -5'
28257 5' -44.3 NC_005902.1 + 18829 0.66 0.999998
Target:  5'- aUGUUGuaaacAAUGCCUUaGGAGUUAAc -3'
miRNA:   3'- aAUAACua---UUGCGGAAcCCUCAAUUu -5'
28257 5' -44.3 NC_005902.1 + 94974 0.66 0.999998
Target:  5'- -----aAUAAUGCCUUaGGAGUUAAGg -3'
miRNA:   3'- aauaacUAUUGCGGAAcCCUCAAUUU- -5'
28257 5' -44.3 NC_005902.1 + 25220 0.67 0.999996
Target:  5'- -cAUUGAcAACGCCUU--GAGUUAAAa -3'
miRNA:   3'- aaUAACUaUUGCGGAAccCUCAAUUU- -5'
28257 5' -44.3 NC_005902.1 + 159836 0.67 0.999996
Target:  5'- -----aAUGAUGCCUUaGGAGUUAAGg -3'
miRNA:   3'- aauaacUAUUGCGGAAcCCUCAAUUU- -5'
28257 5' -44.3 NC_005902.1 + 174976 0.67 0.999995
Target:  5'- -----aAUGAUGCCUUaGGAGUUAAAu -3'
miRNA:   3'- aauaacUAUUGCGGAAcCCUCAAUUU- -5'
28257 5' -44.3 NC_005902.1 + 94459 0.67 0.999992
Target:  5'- gUUAUaGAcAAUGCCUUaGGAGUUAAGa -3'
miRNA:   3'- -AAUAaCUaUUGCGGAAcCCUCAAUUU- -5'
28257 5' -44.3 NC_005902.1 + 95552 0.67 0.999992
Target:  5'- ----cGAUGAUGCCUUaaGAGUUAAAg -3'
miRNA:   3'- aauaaCUAUUGCGGAAccCUCAAUUU- -5'
28257 5' -44.3 NC_005902.1 + 169238 0.67 0.999989
Target:  5'- -----aAUGAUGCCUUaGGAGUUAAAg -3'
miRNA:   3'- aauaacUAUUGCGGAAcCCUCAAUUU- -5'
28257 5' -44.3 NC_005902.1 + 78794 0.67 0.999989
Target:  5'- aUUGUUGAUAACaCCUUaaGAGUUAAAg -3'
miRNA:   3'- -AAUAACUAUUGcGGAAccCUCAAUUU- -5'
28257 5' -44.3 NC_005902.1 + 100913 0.67 0.999985
Target:  5'- aUUAUUGAUGACGCau--GGAGUUu-- -3'
miRNA:   3'- -AAUAACUAUUGCGgaacCCUCAAuuu -5'
28257 5' -44.3 NC_005902.1 + 91086 0.67 0.999985
Target:  5'- aUUAUUGAUGAUGUgU--GGAGUUAAAg -3'
miRNA:   3'- -AAUAACUAUUGCGgAacCCUCAAUUU- -5'
28257 5' -44.3 NC_005902.1 + 83831 0.68 0.999979
Target:  5'- aUGUUGAUGAUaUCUUaGGAGUUAAAg -3'
miRNA:   3'- aAUAACUAUUGcGGAAcCCUCAAUUU- -5'
28257 5' -44.3 NC_005902.1 + 118217 0.68 0.999979
Target:  5'- -cAUUGAcAAUGCUUUaGGAGUUAAAa -3'
miRNA:   3'- aaUAACUaUUGCGGAAcCCUCAAUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.