miRNA display CGI


Results 1 - 20 of 62 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28258 3' -45.6 NC_005902.1 + 184864 0.71 0.997103
Target:  5'- cUUUAACACCUaAGCUGUAuauaUGCUUGUu -3'
miRNA:   3'- -AAAUUGUGGAcUCGAUAU----ACGAGUAc -5'
28258 3' -45.6 NC_005902.1 + 184752 0.81 0.764008
Target:  5'- -cUAACACCUGAGCUAUAUauaCUCAUu -3'
miRNA:   3'- aaAUUGUGGACUCGAUAUAc--GAGUAc -5'
28258 3' -45.6 NC_005902.1 + 184592 0.68 0.999708
Target:  5'- cUUUAACACUUaAGCUAUAuacucacuugcuaUGCUCAUc -3'
miRNA:   3'- -AAAUUGUGGAcUCGAUAU-------------ACGAGUAc -5'
28258 3' -45.6 NC_005902.1 + 170591 0.72 0.993397
Target:  5'- -gUAACACCUGAcCUAUAuaUGCUUAUu -3'
miRNA:   3'- aaAUUGUGGACUcGAUAU--ACGAGUAc -5'
28258 3' -45.6 NC_005902.1 + 169514 0.81 0.732363
Target:  5'- cUUUAACACCUGAGCUAUAUauCUCAg- -3'
miRNA:   3'- -AAAUUGUGGACUCGAUAUAc-GAGUac -5'
28258 3' -45.6 NC_005902.1 + 169126 0.68 0.999825
Target:  5'- cUUUAACACCUaAGCUAuauauuuguuugaUAUGCUUAc- -3'
miRNA:   3'- -AAAUUGUGGAcUCGAU-------------AUACGAGUac -5'
28258 3' -45.6 NC_005902.1 + 167158 0.68 0.999829
Target:  5'- cUUUAACACCUaAGCUAUAUaCUUAa- -3'
miRNA:   3'- -AAAUUGUGGAcUCGAUAUAcGAGUac -5'
28258 3' -45.6 NC_005902.1 + 166130 0.67 0.999869
Target:  5'- cUUUAAUACUUaAGCUAUAuacaUGCUCAUu -3'
miRNA:   3'- -AAAUUGUGGAcUCGAUAU----ACGAGUAc -5'
28258 3' -45.6 NC_005902.1 + 162755 0.66 0.999989
Target:  5'- cUUUAACAUUUaAGCUAUAUGCaaGUGu -3'
miRNA:   3'- -AAAUUGUGGAcUCGAUAUACGagUAC- -5'
28258 3' -45.6 NC_005902.1 + 157852 0.7 0.998639
Target:  5'- aUUUAACACCUaAGCUAUAuauuUGCUUg-- -3'
miRNA:   3'- -AAAUUGUGGAcUCGAUAU----ACGAGuac -5'
28258 3' -45.6 NC_005902.1 + 156790 0.66 0.99997
Target:  5'- -cUAACACCUaAGCUAUAUaCUUAUu -3'
miRNA:   3'- aaAUUGUGGAcUCGAUAUAcGAGUAc -5'
28258 3' -45.6 NC_005902.1 + 156551 0.67 0.999898
Target:  5'- uUUUAACACCUaAGCUAuauauuuacucacUAUGCUUGUu -3'
miRNA:   3'- -AAAUUGUGGAcUCGAU-------------AUACGAGUAc -5'
28258 3' -45.6 NC_005902.1 + 149202 0.69 0.99889
Target:  5'- uUUUAAUACCUaAGCUAUAUaCUCAUu -3'
miRNA:   3'- -AAAUUGUGGAcUCGAUAUAcGAGUAc -5'
28258 3' -45.6 NC_005902.1 + 146429 0.74 0.978047
Target:  5'- cUUUAACACCUaAGCUAuaauucacUAUGCUCAc- -3'
miRNA:   3'- -AAAUUGUGGAcUCGAU--------AUACGAGUac -5'
28258 3' -45.6 NC_005902.1 + 145948 0.68 0.999829
Target:  5'- cUUUAACAUCUaAGCUAUAUaCUCAUu -3'
miRNA:   3'- -AAAUUGUGGAcUCGAUAUAcGAGUAc -5'
28258 3' -45.6 NC_005902.1 + 145048 0.73 0.98827
Target:  5'- cUUUAGCACCUaAGCUAUAUGUgaGUGu -3'
miRNA:   3'- -AAAUUGUGGAcUCGAUAUACGagUAC- -5'
28258 3' -45.6 NC_005902.1 + 143776 0.73 0.980488
Target:  5'- cUUUAACACCUaAGCUAUAUaCUCAUu -3'
miRNA:   3'- -AAAUUGUGGAcUCGAUAUAcGAGUAc -5'
28258 3' -45.6 NC_005902.1 + 143645 0.76 0.945249
Target:  5'- aUUGACACCUaAGCUAUauacuuaacGUGCUCAUu -3'
miRNA:   3'- aAAUUGUGGAcUCGAUA---------UACGAGUAc -5'
28258 3' -45.6 NC_005902.1 + 143021 0.68 0.999829
Target:  5'- cUUUAACAUCUaAGCUAUAUaCUCAUu -3'
miRNA:   3'- -AAAUUGUGGAcUCGAUAUAcGAGUAc -5'
28258 3' -45.6 NC_005902.1 + 142157 0.69 0.999539
Target:  5'- cUUUAACACCUaAGCUAUAUaCUUAUu -3'
miRNA:   3'- -AAAUUGUGGAcUCGAUAUAcGAGUAc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.