miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28258 3' -45.6 NC_005902.1 + 137900 0.72 0.991122
Target:  5'- gUUAACAUCUaAGCUAUauauGUGCUCAUu -3'
miRNA:   3'- aAAUUGUGGAcUCGAUA----UACGAGUAc -5'
28258 3' -45.6 NC_005902.1 + 51676 0.69 0.999528
Target:  5'- uUUUAACACUUaAGCUAUauacucauuugcuGUGCUCAUu -3'
miRNA:   3'- -AAAUUGUGGAcUCGAUA-------------UACGAGUAc -5'
28258 3' -45.6 NC_005902.1 + 69374 0.69 0.999275
Target:  5'- gUUUAACACCUaaaCUAUAUGCUUAUu -3'
miRNA:   3'- -AAAUUGUGGAcucGAUAUACGAGUAc -5'
28258 3' -45.6 NC_005902.1 + 184864 0.71 0.997103
Target:  5'- cUUUAACACCUaAGCUGUAuauaUGCUUGUu -3'
miRNA:   3'- -AAAUUGUGGAcUCGAUAU----ACGAGUAc -5'
28258 3' -45.6 NC_005902.1 + 135815 0.71 0.997103
Target:  5'- cUUUAACACCUaAGCUAUAUauaGCUUAg- -3'
miRNA:   3'- -AAAUUGUGGAcUCGAUAUA---CGAGUac -5'
28258 3' -45.6 NC_005902.1 + 37771 0.71 0.994345
Target:  5'- uUUUAACACCUaAGCUugcUAUGCUUAUu -3'
miRNA:   3'- -AAAUUGUGGAcUCGAu--AUACGAGUAc -5'
28258 3' -45.6 NC_005902.1 + 18859 0.72 0.993397
Target:  5'- uUUUAACACCUaAGCUAUAUacGCUUAa- -3'
miRNA:   3'- -AAAUUGUGGAcUCGAUAUA--CGAGUac -5'
28258 3' -45.6 NC_005902.1 + 100106 0.72 0.993296
Target:  5'- aUUAACACCUaAGCUAuauuauaUAUGUUCAUa -3'
miRNA:   3'- aAAUUGUGGAcUCGAU-------AUACGAGUAc -5'
28258 3' -45.6 NC_005902.1 + 71606 0.72 0.992327
Target:  5'- cUUUAACACCUaAGCUAUAUaCUCAc- -3'
miRNA:   3'- -AAAUUGUGGAcUCGAUAUAcGAGUac -5'
28258 3' -45.6 NC_005902.1 + 117732 0.69 0.999539
Target:  5'- cUUUAACAUCUaAGCUAUAUGCa---- -3'
miRNA:   3'- -AAAUUGUGGAcUCGAUAUACGaguac -5'
28258 3' -45.6 NC_005902.1 + 11409 0.68 0.999628
Target:  5'- cUUUAACACUUaAGCUAUauacuuguuugcuGUGCUCAUu -3'
miRNA:   3'- -AAAUUGUGGAcUCGAUA-------------UACGAGUAc -5'
28258 3' -45.6 NC_005902.1 + 169126 0.68 0.999825
Target:  5'- cUUUAACACCUaAGCUAuauauuuguuugaUAUGCUUAc- -3'
miRNA:   3'- -AAAUUGUGGAcUCGAU-------------AUACGAGUac -5'
28258 3' -45.6 NC_005902.1 + 116674 0.66 0.999989
Target:  5'- uUUUAACACCUGaAGCUuAUAUaGUUUAg- -3'
miRNA:   3'- -AAAUUGUGGAC-UCGA-UAUA-CGAGUac -5'
28258 3' -45.6 NC_005902.1 + 105267 0.66 0.999989
Target:  5'- cUUUAACACCUaAGCUAUAUacccaCUCAc- -3'
miRNA:   3'- -AAAUUGUGGAcUCGAUAUAc----GAGUac -5'
28258 3' -45.6 NC_005902.1 + 22618 0.66 0.999989
Target:  5'- gUUAACACCUaAGCUAUAUauuuaCUCAc- -3'
miRNA:   3'- aAAUUGUGGAcUCGAUAUAc----GAGUac -5'
28258 3' -45.6 NC_005902.1 + 15310 0.66 0.999989
Target:  5'- aUUAACACCUGAauuaUAUAUGCaauuauUCAUa -3'
miRNA:   3'- aAAUUGUGGACUcg--AUAUACG------AGUAc -5'
28258 3' -45.6 NC_005902.1 + 118296 0.66 0.999978
Target:  5'- uUUUAACACUUaAGCUAUAUaCUCAc- -3'
miRNA:   3'- -AAAUUGUGGAcUCGAUAUAcGAGUac -5'
28258 3' -45.6 NC_005902.1 + 140870 0.67 0.999944
Target:  5'- cUUUAACAUCUaAGCUGUAUaCUCAa- -3'
miRNA:   3'- -AAAUUGUGGAcUCGAUAUAcGAGUac -5'
28258 3' -45.6 NC_005902.1 + 156551 0.67 0.999898
Target:  5'- uUUUAACACCUaAGCUAuauauuuacucacUAUGCUUGUu -3'
miRNA:   3'- -AAAUUGUGGAcUCGAU-------------AUACGAGUAc -5'
28258 3' -45.6 NC_005902.1 + 111232 0.67 0.999869
Target:  5'- uUUUAACACCUaAGCUAUAUauacaCUCAUu -3'
miRNA:   3'- -AAAUUGUGGAcUCGAUAUAc----GAGUAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.