miRNA display CGI


Results 41 - 60 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28259 5' -44.7 NC_005902.1 + 114356 1.05 0.060212
Target:  5'- cAUCAUCAAUGACGUGUUAGGAGUUAAg -3'
miRNA:   3'- -UAGUAGUUACUGCACAAUCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 114776 0.72 0.997451
Target:  5'- uGUCAUCGGUGACGaUGUa--GAGUUAAa -3'
miRNA:   3'- -UAGUAGUUACUGC-ACAaucCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 118749 0.66 0.999997
Target:  5'- uAUUAUCAAUaAUGU-UUAGGAGUUAAa -3'
miRNA:   3'- -UAGUAGUUAcUGCAcAAUCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 127436 0.67 0.999988
Target:  5'- cAUCAUCAAUGAUGcGUa--GAGUUAAa -3'
miRNA:   3'- -UAGUAGUUACUGCaCAaucCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 127693 0.67 0.99999
Target:  5'- cGUCAUCAAUacuuUGUGUuauugauaacgccuUGGGAGUUAAa -3'
miRNA:   3'- -UAGUAGUUAcu--GCACA--------------AUCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 131043 0.71 0.99856
Target:  5'- uGUUAUUAAUGAUGccUUAGGGGUUAAa -3'
miRNA:   3'- -UAGUAGUUACUGCacAAUCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 135623 0.68 0.99994
Target:  5'- uGUCAUCGAUGAUGccUUAGGAaUUAAc -3'
miRNA:   3'- -UAGUAGUUACUGCacAAUCCUcAAUU- -5'
28259 5' -44.7 NC_005902.1 + 136052 0.71 0.999045
Target:  5'- cAUUAUUGAUGAUGccUUAGGAGUUAAa -3'
miRNA:   3'- -UAGUAGUUACUGCacAAUCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 137633 0.71 0.99856
Target:  5'- -aCAUCAAUGAUacuUUAGGAGUUAAa -3'
miRNA:   3'- uaGUAGUUACUGcacAAUCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 139848 0.78 0.927579
Target:  5'- cAUCAUUGAUGACGccaugaGUUAGGGGUUAAc -3'
miRNA:   3'- -UAGUAGUUACUGCa-----CAAUCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 142118 0.74 0.990732
Target:  5'- uGUCAUCGAUGAUGcuUUAGGuGUUAAa -3'
miRNA:   3'- -UAGUAGUUACUGCacAAUCCuCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 142446 0.68 0.99994
Target:  5'- uGUUAUCGAUGACauuUUAGGAGUUu- -3'
miRNA:   3'- -UAGUAGUUACUGcacAAUCCUCAAuu -5'
28259 5' -44.7 NC_005902.1 + 143563 0.72 0.99788
Target:  5'- cAUUGUCAAUGACaucUUAGGAGUUAAc -3'
miRNA:   3'- -UAGUAGUUACUGcacAAUCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 143889 0.74 0.984149
Target:  5'- uAUUGUCAAUGACaUGUUuGGAGUUAAc -3'
miRNA:   3'- -UAGUAGUUACUGcACAAuCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 149173 0.78 0.915432
Target:  5'- cAUCAUCGAUGACauuUUAGGAGUUAAu -3'
miRNA:   3'- -UAGUAGUUACUGcacAAUCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 149286 0.68 0.99992
Target:  5'- cAUCAUCGAUGAUGccUUAGGAuUUAAa -3'
miRNA:   3'- -UAGUAGUUACUGCacAAUCCUcAAUU- -5'
28259 5' -44.7 NC_005902.1 + 152777 0.66 0.999997
Target:  5'- uGUCAUCGAcGAUacuUUAGGAGUUAAa -3'
miRNA:   3'- -UAGUAGUUaCUGcacAAUCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 158306 0.71 0.999045
Target:  5'- cAUCggCGAUGAUGccUUAGGAGUUAAa -3'
miRNA:   3'- -UAGuaGUUACUGCacAAUCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 159714 0.76 0.968339
Target:  5'- cGUCAUUGAUGAUGccUUAGGAGUUAAu -3'
miRNA:   3'- -UAGUAGUUACUGCacAAUCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 159829 0.82 0.79085
Target:  5'- cAUCGUCAAUGAUGccUUAGGAGUUAAg -3'
miRNA:   3'- -UAGUAGUUACUGCacAAUCCUCAAUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.