miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28259 5' -44.7 NC_005902.1 + 58191 0.67 0.999988
Target:  5'- cAUCAUCAAUGAUGcGUa--GAGUUAAa -3'
miRNA:   3'- -UAGUAGUUACUGCaCAaucCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 58638 0.67 0.999991
Target:  5'- --uGUCAAUGACGUcUUAaGAGUUAAa -3'
miRNA:   3'- uagUAGUUACUGCAcAAUcCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 66970 0.68 0.999967
Target:  5'- cAUCGUUGAUGAUGUGU--GGAGcUAAu -3'
miRNA:   3'- -UAGUAGUUACUGCACAauCCUCaAUU- -5'
28259 5' -44.7 NC_005902.1 + 69276 0.87 0.507914
Target:  5'- uGUCGUCAAUGAUGUuUUAGGAGUUAAa -3'
miRNA:   3'- -UAGUAGUUACUGCAcAAUCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 71295 0.76 0.964886
Target:  5'- uAUUAUCAAUGAUGccUUGGGAGUUAGg -3'
miRNA:   3'- -UAGUAGUUACUGCacAAUCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 71716 0.68 0.999976
Target:  5'- cAUCAUCAAUGACGaUGU--GGAaUUAAa -3'
miRNA:   3'- -UAGUAGUUACUGC-ACAauCCUcAAUU- -5'
28259 5' -44.7 NC_005902.1 + 72300 0.69 0.999763
Target:  5'- uAUUGUUAAUGAUGcUGcuUUAGGAGUUAAa -3'
miRNA:   3'- -UAGUAGUUACUGC-AC--AAUCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 74864 0.66 0.999996
Target:  5'- cGUCAUCAAcaACGcaUUAGGAGUUAAa -3'
miRNA:   3'- -UAGUAGUUacUGCacAAUCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 81755 0.68 0.999955
Target:  5'- cGUCAUCAAUGAUGccUUAaGAGUUAAc -3'
miRNA:   3'- -UAGUAGUUACUGCacAAUcCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 82100 0.66 0.999996
Target:  5'- uAUCAUCAAUGAUGcuUUaagaauuaaAGGGGUUAAa -3'
miRNA:   3'- -UAGUAGUUACUGCacAA---------UCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 84067 0.75 0.979753
Target:  5'- cAUUAUCAAUGACGauUUAGGAGUa-- -3'
miRNA:   3'- -UAGUAGUUACUGCacAAUCCUCAauu -5'
28259 5' -44.7 NC_005902.1 + 90143 0.77 0.942164
Target:  5'- cGUCAUCAAUGACacaaaGUGUuguugauaaugccuUAGGAGUUAGa -3'
miRNA:   3'- -UAGUAGUUACUG-----CACA--------------AUCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 90507 0.8 0.847142
Target:  5'- cAUCAUCGAUGACGaUGU--GGAGUUAAa -3'
miRNA:   3'- -UAGUAGUUACUGC-ACAauCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 91085 0.74 0.990732
Target:  5'- cAUUAUUGAUGAUGUGU--GGAGUUAAa -3'
miRNA:   3'- -UAGUAGUUACUGCACAauCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 94967 0.69 0.999893
Target:  5'- cAUCAUCAAUaAUGccUUAGGAGUUAAg -3'
miRNA:   3'- -UAGUAGUUAcUGCacAAUCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 95546 0.68 0.999955
Target:  5'- cGUCAUCGAUGAUGccUUAaGAGUUAAa -3'
miRNA:   3'- -UAGUAGUUACUGCacAAUcCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 104179 0.73 0.994945
Target:  5'- cAUCAUCAAUaACGccUUAGGAGUUAAa -3'
miRNA:   3'- -UAGUAGUUAcUGCacAAUCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 104298 0.76 0.957205
Target:  5'- cAUCAUUGAUGACgGUGUgaggugGGGGGUUAAa -3'
miRNA:   3'- -UAGUAGUUACUG-CACAa-----UCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 106108 0.72 0.996951
Target:  5'- -gCAUUAAUGAUGccUUAGGAGUUAAa -3'
miRNA:   3'- uaGUAGUUACUGCacAAUCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 110284 0.68 0.999967
Target:  5'- uGUCAUUGAUGGUGcuUUAGGAGUUAAg -3'
miRNA:   3'- -UAGUAGUUACUGCacAAUCCUCAAUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.