miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28259 5' -44.7 NC_005902.1 + 142446 0.68 0.99994
Target:  5'- uGUUAUCGAUGACauuUUAGGAGUUu- -3'
miRNA:   3'- -UAGUAGUUACUGcacAAUCCUCAAuu -5'
28259 5' -44.7 NC_005902.1 + 142118 0.74 0.990732
Target:  5'- uGUCAUCGAUGAUGcuUUAGGuGUUAAa -3'
miRNA:   3'- -UAGUAGUUACUGCacAAUCCuCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 139848 0.78 0.927579
Target:  5'- cAUCAUUGAUGACGccaugaGUUAGGGGUUAAc -3'
miRNA:   3'- -UAGUAGUUACUGCa-----CAAUCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 137633 0.71 0.99856
Target:  5'- -aCAUCAAUGAUacuUUAGGAGUUAAa -3'
miRNA:   3'- uaGUAGUUACUGcacAAUCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 136052 0.71 0.999045
Target:  5'- cAUUAUUGAUGAUGccUUAGGAGUUAAa -3'
miRNA:   3'- -UAGUAGUUACUGCacAAUCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 135623 0.68 0.99994
Target:  5'- uGUCAUCGAUGAUGccUUAGGAaUUAAc -3'
miRNA:   3'- -UAGUAGUUACUGCacAAUCCUcAAUU- -5'
28259 5' -44.7 NC_005902.1 + 131043 0.71 0.99856
Target:  5'- uGUUAUUAAUGAUGccUUAGGGGUUAAa -3'
miRNA:   3'- -UAGUAGUUACUGCacAAUCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 127693 0.67 0.99999
Target:  5'- cGUCAUCAAUacuuUGUGUuauugauaacgccuUGGGAGUUAAa -3'
miRNA:   3'- -UAGUAGUUAcu--GCACA--------------AUCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 127436 0.67 0.999988
Target:  5'- cAUCAUCAAUGAUGcGUa--GAGUUAAa -3'
miRNA:   3'- -UAGUAGUUACUGCaCAaucCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 118749 0.66 0.999997
Target:  5'- uAUUAUCAAUaAUGU-UUAGGAGUUAAa -3'
miRNA:   3'- -UAGUAGUUAcUGCAcAAUCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 114776 0.72 0.997451
Target:  5'- uGUCAUCGGUGACGaUGUa--GAGUUAAa -3'
miRNA:   3'- -UAGUAGUUACUGC-ACAaucCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 114356 1.05 0.060212
Target:  5'- cAUCAUCAAUGACGUGUUAGGAGUUAAg -3'
miRNA:   3'- -UAGUAGUUACUGCACAAUCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 110284 0.68 0.999967
Target:  5'- uGUCAUUGAUGGUGcuUUAGGAGUUAAg -3'
miRNA:   3'- -UAGUAGUUACUGCacAAUCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 106108 0.72 0.996951
Target:  5'- -gCAUUAAUGAUGccUUAGGAGUUAAa -3'
miRNA:   3'- uaGUAGUUACUGCacAAUCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 104298 0.76 0.957205
Target:  5'- cAUCAUUGAUGACgGUGUgaggugGGGGGUUAAa -3'
miRNA:   3'- -UAGUAGUUACUG-CACAa-----UCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 104179 0.73 0.994945
Target:  5'- cAUCAUCAAUaACGccUUAGGAGUUAAa -3'
miRNA:   3'- -UAGUAGUUAcUGCacAAUCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 95546 0.68 0.999955
Target:  5'- cGUCAUCGAUGAUGccUUAaGAGUUAAa -3'
miRNA:   3'- -UAGUAGUUACUGCacAAUcCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 94967 0.69 0.999893
Target:  5'- cAUCAUCAAUaAUGccUUAGGAGUUAAg -3'
miRNA:   3'- -UAGUAGUUAcUGCacAAUCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 91085 0.74 0.990732
Target:  5'- cAUUAUUGAUGAUGUGU--GGAGUUAAa -3'
miRNA:   3'- -UAGUAGUUACUGCACAauCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 90507 0.8 0.847142
Target:  5'- cAUCAUCGAUGACGaUGU--GGAGUUAAa -3'
miRNA:   3'- -UAGUAGUUACUGC-ACAauCCUCAAUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.