miRNA display CGI


Results 1 - 20 of 72 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28259 5' -44.7 NC_005902.1 + 182908 0.72 0.997451
Target:  5'- cAUUGUCAGUGACGUauacGGAGUUAAu -3'
miRNA:   3'- -UAGUAGUUACUGCAcaauCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 177692 0.68 0.99994
Target:  5'- uGUCAUCGAcaAUGUuUUAGGAGUUAAg -3'
miRNA:   3'- -UAGUAGUUacUGCAcAAUCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 174969 0.82 0.760246
Target:  5'- uAUCAUCAAUGAUGccUUAGGAGUUAAa -3'
miRNA:   3'- -UAGUAGUUACUGCacAAUCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 172698 0.73 0.993092
Target:  5'- uGUUGUCAAUGAUGccUUAGGGGUUAAc -3'
miRNA:   3'- -UAGUAGUUACUGCacAAUCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 170216 0.68 0.999928
Target:  5'- cAUUAUCAAUGAUGgggcaucauuaacaaUGccUUAGGAGUUAAa -3'
miRNA:   3'- -UAGUAGUUACUGC---------------AC--AAUCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 169921 0.72 0.995707
Target:  5'- uAUCAcCGAcGACGUGUUuGGGGUUAAa -3'
miRNA:   3'- -UAGUaGUUaCUGCACAAuCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 169231 0.83 0.72842
Target:  5'- uGUCAUCAAUGAUGccUUAGGAGUUAAa -3'
miRNA:   3'- -UAGUAGUUACUGCacAAUCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 169090 0.67 0.999983
Target:  5'- cGUCGUUGAUGACaGUGU--GGAGUa-- -3'
miRNA:   3'- -UAGUAGUUACUG-CACAauCCUCAauu -5'
28259 5' -44.7 NC_005902.1 + 165816 0.77 0.94845
Target:  5'- cAUUAUCAAUGAUGccUUAGGAGUUAAc -3'
miRNA:   3'- -UAGUAGUUACUGCacAAUCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 163580 0.7 0.999474
Target:  5'- uAUCAUUGAUGACacaaaGUGUuauuaaugacacuuUAGGAGUUAAg -3'
miRNA:   3'- -UAGUAGUUACUG-----CACA--------------AUCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 162346 0.68 0.999955
Target:  5'- cGUCAUUAAUGAUGUGUUAGu------ -3'
miRNA:   3'- -UAGUAGUUACUGCACAAUCcucaauu -5'
28259 5' -44.7 NC_005902.1 + 160966 0.66 0.999999
Target:  5'- uAUCGUCAAcaACGcuUUAGGAGUUAAa -3'
miRNA:   3'- -UAGUAGUUacUGCacAAUCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 159829 0.82 0.79085
Target:  5'- cAUCGUCAAUGAUGccUUAGGAGUUAAg -3'
miRNA:   3'- -UAGUAGUUACUGCacAAUCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 159714 0.76 0.968339
Target:  5'- cGUCAUUGAUGAUGccUUAGGAGUUAAu -3'
miRNA:   3'- -UAGUAGUUACUGCacAAUCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 158306 0.71 0.999045
Target:  5'- cAUCggCGAUGAUGccUUAGGAGUUAAa -3'
miRNA:   3'- -UAGuaGUUACUGCacAAUCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 152777 0.66 0.999997
Target:  5'- uGUCAUCGAcGAUacuUUAGGAGUUAAa -3'
miRNA:   3'- -UAGUAGUUaCUGcacAAUCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 149286 0.68 0.99992
Target:  5'- cAUCAUCGAUGAUGccUUAGGAuUUAAa -3'
miRNA:   3'- -UAGUAGUUACUGCacAAUCCUcAAUU- -5'
28259 5' -44.7 NC_005902.1 + 149173 0.78 0.915432
Target:  5'- cAUCAUCGAUGACauuUUAGGAGUUAAu -3'
miRNA:   3'- -UAGUAGUUACUGcacAAUCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 143889 0.74 0.984149
Target:  5'- uAUUGUCAAUGACaUGUUuGGAGUUAAc -3'
miRNA:   3'- -UAGUAGUUACUGcACAAuCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 143563 0.72 0.99788
Target:  5'- cAUUGUCAAUGACaucUUAGGAGUUAAc -3'
miRNA:   3'- -UAGUAGUUACUGcacAAUCCUCAAUU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.