miRNA display CGI


Results 1 - 20 of 72 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28259 5' -44.7 NC_005902.1 + 8264 0.68 0.999955
Target:  5'- cAUCAUUggUG-CGUG--AGGGGUUAAa -3'
miRNA:   3'- -UAGUAGuuACuGCACaaUCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 11107 0.67 0.999988
Target:  5'- -aUAUCAAUGAUauuUUAGGAGUUAAu -3'
miRNA:   3'- uaGUAGUUACUGcacAAUCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 12825 0.68 0.999971
Target:  5'- cAUUAUCAAUGACGcuuugucauugaugaUGU--GGAGUUAAa -3'
miRNA:   3'- -UAGUAGUUACUGC---------------ACAauCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 15968 0.67 0.999994
Target:  5'- uGUCGUUGAUGAUGU----GGAGUUAAa -3'
miRNA:   3'- -UAGUAGUUACUGCAcaauCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 20090 0.78 0.927579
Target:  5'- uGUCAUCGAUGACaugaGUUAGGAGUa-- -3'
miRNA:   3'- -UAGUAGUUACUGca--CAAUCCUCAauu -5'
28259 5' -44.7 NC_005902.1 + 20200 0.77 0.938582
Target:  5'- uGUUAUCAAUGAUGccUUAGGAGUUAAc -3'
miRNA:   3'- -UAGUAGUUACUGCacAAUCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 20257 0.86 0.595307
Target:  5'- uAUCAUCAAUGAUGUuUUAGGAGUUAu -3'
miRNA:   3'- -UAGUAGUUACUGCAcAAUCCUCAAUu -5'
28259 5' -44.7 NC_005902.1 + 23384 0.71 0.998248
Target:  5'- uGUCAUUAAUGAUGUGUUcaauguuaaAGG-GUUAAc -3'
miRNA:   3'- -UAGUAGUUACUGCACAA---------UCCuCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 24068 0.75 0.973643
Target:  5'- cAUCAUCAAUGAUacuauGUGUuauuaacgaugccuUAGGAGUUAAa -3'
miRNA:   3'- -UAGUAGUUACUG-----CACA--------------AUCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 24261 0.71 0.999045
Target:  5'- uAUCAUCAAUGACaccUUAGGuGUUAAa -3'
miRNA:   3'- -UAGUAGUUACUGcacAAUCCuCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 27634 0.71 0.999045
Target:  5'- cAUCggCGAUGAUGccUUAGGAGUUAAa -3'
miRNA:   3'- -UAGuaGUUACUGCacAAUCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 28119 0.7 0.999612
Target:  5'- cAUCAUCGAUGACacau--GGAGUUAAa -3'
miRNA:   3'- -UAGUAGUUACUGcacaauCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 33172 0.66 0.999997
Target:  5'- uGUCAUCGAcGAUacuUUAGGAGUUAAa -3'
miRNA:   3'- -UAGUAGUUaCUGcacAAUCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 36182 0.73 0.994945
Target:  5'- uGUCAUCAAcGAUGUuUUAGGAGUUu- -3'
miRNA:   3'- -UAGUAGUUaCUGCAcAAUCCUCAAuu -5'
28259 5' -44.7 NC_005902.1 + 37354 0.82 0.749757
Target:  5'- cGUCAUCGAUGAUGccUUAGGAGUUAAa -3'
miRNA:   3'- -UAGUAGUUACUGCacAAUCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 42329 0.76 0.968339
Target:  5'- cAUCAUCAAUGACuGUgaaGUUGGGGGUa-- -3'
miRNA:   3'- -UAGUAGUUACUG-CA---CAAUCCUCAauu -5'
28259 5' -44.7 NC_005902.1 + 48201 0.76 0.961177
Target:  5'- uAUCAUCGAUGACGccUUAGGAGcUAAa -3'
miRNA:   3'- -UAGUAGUUACUGCacAAUCCUCaAUU- -5'
28259 5' -44.7 NC_005902.1 + 49917 0.72 0.995707
Target:  5'- uGUCAUUAAUGAUaGUGU--GGAGUUAAa -3'
miRNA:   3'- -UAGUAGUUACUG-CACAauCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 50430 0.69 0.999893
Target:  5'- cAUCAUCGAUGACauauuuGGAGUUAu -3'
miRNA:   3'- -UAGUAGUUACUGcacaauCCUCAAUu -5'
28259 5' -44.7 NC_005902.1 + 55224 0.66 0.999997
Target:  5'- uGUUAUCGAUGACGccUUAGaAGUUAAa -3'
miRNA:   3'- -UAGUAGUUACUGCacAAUCcUCAAUU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.