Results 21 - 40 of 72 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28259 | 5' | -44.7 | NC_005902.1 | + | 84067 | 0.75 | 0.979753 |
Target: 5'- cAUUAUCAAUGACGauUUAGGAGUa-- -3' miRNA: 3'- -UAGUAGUUACUGCacAAUCCUCAauu -5' |
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28259 | 5' | -44.7 | NC_005902.1 | + | 143889 | 0.74 | 0.984149 |
Target: 5'- uAUUGUCAAUGACaUGUUuGGAGUUAAc -3' miRNA: 3'- -UAGUAGUUACUGcACAAuCCUCAAUU- -5' |
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28259 | 5' | -44.7 | NC_005902.1 | + | 142118 | 0.74 | 0.990732 |
Target: 5'- uGUCAUCGAUGAUGcuUUAGGuGUUAAa -3' miRNA: 3'- -UAGUAGUUACUGCacAAUCCuCAAUU- -5' |
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28259 | 5' | -44.7 | NC_005902.1 | + | 91085 | 0.74 | 0.990732 |
Target: 5'- cAUUAUUGAUGAUGUGU--GGAGUUAAa -3' miRNA: 3'- -UAGUAGUUACUGCACAauCCUCAAUU- -5' |
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28259 | 5' | -44.7 | NC_005902.1 | + | 172698 | 0.73 | 0.993092 |
Target: 5'- uGUUGUCAAUGAUGccUUAGGGGUUAAc -3' miRNA: 3'- -UAGUAGUUACUGCacAAUCCUCAAUU- -5' |
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28259 | 5' | -44.7 | NC_005902.1 | + | 36182 | 0.73 | 0.994945 |
Target: 5'- uGUCAUCAAcGAUGUuUUAGGAGUUu- -3' miRNA: 3'- -UAGUAGUUaCUGCAcAAUCCUCAAuu -5' |
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28259 | 5' | -44.7 | NC_005902.1 | + | 104179 | 0.73 | 0.994945 |
Target: 5'- cAUCAUCAAUaACGccUUAGGAGUUAAa -3' miRNA: 3'- -UAGUAGUUAcUGCacAAUCCUCAAUU- -5' |
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28259 | 5' | -44.7 | NC_005902.1 | + | 49917 | 0.72 | 0.995707 |
Target: 5'- uGUCAUUAAUGAUaGUGU--GGAGUUAAa -3' miRNA: 3'- -UAGUAGUUACUG-CACAauCCUCAAUU- -5' |
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28259 | 5' | -44.7 | NC_005902.1 | + | 169921 | 0.72 | 0.995707 |
Target: 5'- uAUCAcCGAcGACGUGUUuGGGGUUAAa -3' miRNA: 3'- -UAGUaGUUaCUGCACAAuCCUCAAUU- -5' |
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28259 | 5' | -44.7 | NC_005902.1 | + | 106108 | 0.72 | 0.996951 |
Target: 5'- -gCAUUAAUGAUGccUUAGGAGUUAAa -3' miRNA: 3'- uaGUAGUUACUGCacAAUCCUCAAUU- -5' |
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28259 | 5' | -44.7 | NC_005902.1 | + | 182908 | 0.72 | 0.997451 |
Target: 5'- cAUUGUCAGUGACGUauacGGAGUUAAu -3' miRNA: 3'- -UAGUAGUUACUGCAcaauCCUCAAUU- -5' |
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28259 | 5' | -44.7 | NC_005902.1 | + | 114776 | 0.72 | 0.997451 |
Target: 5'- uGUCAUCGGUGACGaUGUa--GAGUUAAa -3' miRNA: 3'- -UAGUAGUUACUGC-ACAaucCUCAAUU- -5' |
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28259 | 5' | -44.7 | NC_005902.1 | + | 143563 | 0.72 | 0.99788 |
Target: 5'- cAUUGUCAAUGACaucUUAGGAGUUAAc -3' miRNA: 3'- -UAGUAGUUACUGcacAAUCCUCAAUU- -5' |
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28259 | 5' | -44.7 | NC_005902.1 | + | 23384 | 0.71 | 0.998248 |
Target: 5'- uGUCAUUAAUGAUGUGUUcaauguuaaAGG-GUUAAc -3' miRNA: 3'- -UAGUAGUUACUGCACAA---------UCCuCAAUU- -5' |
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28259 | 5' | -44.7 | NC_005902.1 | + | 131043 | 0.71 | 0.99856 |
Target: 5'- uGUUAUUAAUGAUGccUUAGGGGUUAAa -3' miRNA: 3'- -UAGUAGUUACUGCacAAUCCUCAAUU- -5' |
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28259 | 5' | -44.7 | NC_005902.1 | + | 137633 | 0.71 | 0.99856 |
Target: 5'- -aCAUCAAUGAUacuUUAGGAGUUAAa -3' miRNA: 3'- uaGUAGUUACUGcacAAUCCUCAAUU- -5' |
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28259 | 5' | -44.7 | NC_005902.1 | + | 158306 | 0.71 | 0.999045 |
Target: 5'- cAUCggCGAUGAUGccUUAGGAGUUAAa -3' miRNA: 3'- -UAGuaGUUACUGCacAAUCCUCAAUU- -5' |
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28259 | 5' | -44.7 | NC_005902.1 | + | 136052 | 0.71 | 0.999045 |
Target: 5'- cAUUAUUGAUGAUGccUUAGGAGUUAAa -3' miRNA: 3'- -UAGUAGUUACUGCacAAUCCUCAAUU- -5' |
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28259 | 5' | -44.7 | NC_005902.1 | + | 24261 | 0.71 | 0.999045 |
Target: 5'- uAUCAUCAAUGACaccUUAGGuGUUAAa -3' miRNA: 3'- -UAGUAGUUACUGcacAAUCCuCAAUU- -5' |
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28259 | 5' | -44.7 | NC_005902.1 | + | 27634 | 0.71 | 0.999045 |
Target: 5'- cAUCggCGAUGAUGccUUAGGAGUUAAa -3' miRNA: 3'- -UAGuaGUUACUGCacAAUCCUCAAUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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