miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28259 5' -44.7 NC_005902.1 + 149286 0.68 0.99992
Target:  5'- cAUCAUCGAUGAUGccUUAGGAuUUAAa -3'
miRNA:   3'- -UAGUAGUUACUGCacAAUCCUcAAUU- -5'
28259 5' -44.7 NC_005902.1 + 58638 0.67 0.999991
Target:  5'- --uGUCAAUGACGUcUUAaGAGUUAAa -3'
miRNA:   3'- uagUAGUUACUGCAcAAUcCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 50430 0.69 0.999893
Target:  5'- cAUCAUCGAUGACauauuuGGAGUUAu -3'
miRNA:   3'- -UAGUAGUUACUGcacaauCCUCAAUu -5'
28259 5' -44.7 NC_005902.1 + 20090 0.78 0.927579
Target:  5'- uGUCAUCGAUGACaugaGUUAGGAGUa-- -3'
miRNA:   3'- -UAGUAGUUACUGca--CAAUCCUCAauu -5'
28259 5' -44.7 NC_005902.1 + 58191 0.67 0.999988
Target:  5'- cAUCAUCAAUGAUGcGUa--GAGUUAAa -3'
miRNA:   3'- -UAGUAGUUACUGCaCAaucCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 12825 0.68 0.999971
Target:  5'- cAUUAUCAAUGACGcuuugucauugaugaUGU--GGAGUUAAa -3'
miRNA:   3'- -UAGUAGUUACUGC---------------ACAauCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 15968 0.67 0.999994
Target:  5'- uGUCGUUGAUGAUGU----GGAGUUAAa -3'
miRNA:   3'- -UAGUAGUUACUGCAcaauCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 33172 0.66 0.999997
Target:  5'- uGUCAUCGAcGAUacuUUAGGAGUUAAa -3'
miRNA:   3'- -UAGUAGUUaCUGcacAAUCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 149173 0.78 0.915432
Target:  5'- cAUCAUCGAUGACauuUUAGGAGUUAAu -3'
miRNA:   3'- -UAGUAGUUACUGcacAAUCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 90507 0.8 0.847142
Target:  5'- cAUCAUCGAUGACGaUGU--GGAGUUAAa -3'
miRNA:   3'- -UAGUAGUUACUGC-ACAauCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 20200 0.77 0.938582
Target:  5'- uGUUAUCAAUGAUGccUUAGGAGUUAAc -3'
miRNA:   3'- -UAGUAGUUACUGCacAAUCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 139848 0.78 0.927579
Target:  5'- cAUCAUUGAUGACGccaugaGUUAGGGGUUAAc -3'
miRNA:   3'- -UAGUAGUUACUGCa-----CAAUCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 127436 0.67 0.999988
Target:  5'- cAUCAUCAAUGAUGcGUa--GAGUUAAa -3'
miRNA:   3'- -UAGUAGUUACUGCaCAaucCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 159714 0.76 0.968339
Target:  5'- cGUCAUUGAUGAUGccUUAGGAGUUAAu -3'
miRNA:   3'- -UAGUAGUUACUGCacAAUCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 24068 0.75 0.973643
Target:  5'- cAUCAUCAAUGAUacuauGUGUuauuaacgaugccuUAGGAGUUAAa -3'
miRNA:   3'- -UAGUAGUUACUG-----CACA--------------AUCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 84067 0.75 0.979753
Target:  5'- cAUUAUCAAUGACGauUUAGGAGUa-- -3'
miRNA:   3'- -UAGUAGUUACUGCacAAUCCUCAauu -5'
28259 5' -44.7 NC_005902.1 + 143889 0.74 0.984149
Target:  5'- uAUUGUCAAUGACaUGUUuGGAGUUAAc -3'
miRNA:   3'- -UAGUAGUUACUGcACAAuCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 36182 0.73 0.994945
Target:  5'- uGUCAUCAAcGAUGUuUUAGGAGUUu- -3'
miRNA:   3'- -UAGUAGUUaCUGCAcAAUCCUCAAuu -5'
28259 5' -44.7 NC_005902.1 + 170216 0.68 0.999928
Target:  5'- cAUUAUCAAUGAUGgggcaucauuaacaaUGccUUAGGAGUUAAa -3'
miRNA:   3'- -UAGUAGUUACUGC---------------AC--AAUCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 94967 0.69 0.999893
Target:  5'- cAUCAUCAAUaAUGccUUAGGAGUUAAg -3'
miRNA:   3'- -UAGUAGUUAcUGCacAAUCCUCAAUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.