miRNA display CGI


Results 41 - 60 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28259 5' -44.7 NC_005902.1 + 11107 0.67 0.999988
Target:  5'- -aUAUCAAUGAUauuUUAGGAGUUAAu -3'
miRNA:   3'- uaGUAGUUACUGcacAAUCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 127693 0.67 0.99999
Target:  5'- cGUCAUCAAUacuuUGUGUuauugauaacgccuUGGGAGUUAAa -3'
miRNA:   3'- -UAGUAGUUAcu--GCACA--------------AUCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 84067 0.75 0.979753
Target:  5'- cAUUAUCAAUGACGauUUAGGAGUa-- -3'
miRNA:   3'- -UAGUAGUUACUGCacAAUCCUCAauu -5'
28259 5' -44.7 NC_005902.1 + 55224 0.66 0.999997
Target:  5'- uGUUAUCGAUGACGccUUAGaAGUUAAa -3'
miRNA:   3'- -UAGUAGUUACUGCacAAUCcUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 143889 0.74 0.984149
Target:  5'- uAUUGUCAAUGACaUGUUuGGAGUUAAc -3'
miRNA:   3'- -UAGUAGUUACUGcACAAuCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 135623 0.68 0.99994
Target:  5'- uGUCAUCGAUGAUGccUUAGGAaUUAAc -3'
miRNA:   3'- -UAGUAGUUACUGCacAAUCCUcAAUU- -5'
28259 5' -44.7 NC_005902.1 + 170216 0.68 0.999928
Target:  5'- cAUUAUCAAUGAUGgggcaucauuaacaaUGccUUAGGAGUUAAa -3'
miRNA:   3'- -UAGUAGUUACUGC---------------AC--AAUCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 94967 0.69 0.999893
Target:  5'- cAUCAUCAAUaAUGccUUAGGAGUUAAg -3'
miRNA:   3'- -UAGUAGUUAcUGCacAAUCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 23384 0.71 0.998248
Target:  5'- uGUCAUUAAUGAUGUGUUcaauguuaaAGG-GUUAAc -3'
miRNA:   3'- -UAGUAGUUACUGCACAA---------UCCuCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 131043 0.71 0.99856
Target:  5'- uGUUAUUAAUGAUGccUUAGGGGUUAAa -3'
miRNA:   3'- -UAGUAGUUACUGCacAAUCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 174969 0.82 0.760246
Target:  5'- uAUCAUCAAUGAUGccUUAGGAGUUAAa -3'
miRNA:   3'- -UAGUAGUUACUGCacAAUCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 169231 0.83 0.72842
Target:  5'- uGUCAUCAAUGAUGccUUAGGAGUUAAa -3'
miRNA:   3'- -UAGUAGUUACUGCacAAUCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 20257 0.86 0.595307
Target:  5'- uAUCAUCAAUGAUGUuUUAGGAGUUAu -3'
miRNA:   3'- -UAGUAGUUACUGCAcAAUCCUCAAUu -5'
28259 5' -44.7 NC_005902.1 + 69276 0.87 0.507914
Target:  5'- uGUCGUCAAUGAUGUuUUAGGAGUUAAa -3'
miRNA:   3'- -UAGUAGUUACUGCAcAAUCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 114356 1.05 0.060212
Target:  5'- cAUCAUCAAUGACGUGUUAGGAGUUAAg -3'
miRNA:   3'- -UAGUAGUUACUGCACAAUCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 24261 0.71 0.999045
Target:  5'- uAUCAUCAAUGACaccUUAGGuGUUAAa -3'
miRNA:   3'- -UAGUAGUUACUGcacAAUCCuCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 136052 0.71 0.999045
Target:  5'- cAUUAUUGAUGAUGccUUAGGAGUUAAa -3'
miRNA:   3'- -UAGUAGUUACUGCacAAUCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 158306 0.71 0.999045
Target:  5'- cAUCggCGAUGAUGccUUAGGAGUUAAa -3'
miRNA:   3'- -UAGuaGUUACUGCacAAUCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 49917 0.72 0.995707
Target:  5'- uGUCAUUAAUGAUaGUGU--GGAGUUAAa -3'
miRNA:   3'- -UAGUAGUUACUG-CACAauCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 104179 0.73 0.994945
Target:  5'- cAUCAUCAAUaACGccUUAGGAGUUAAa -3'
miRNA:   3'- -UAGUAGUUAcUGCacAAUCCUCAAUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.