Results 41 - 60 of 72 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28259 | 5' | -44.7 | NC_005902.1 | + | 163580 | 0.7 | 0.999474 |
Target: 5'- uAUCAUUGAUGACacaaaGUGUuauuaaugacacuuUAGGAGUUAAg -3' miRNA: 3'- -UAGUAGUUACUG-----CACA--------------AUCCUCAAUU- -5' |
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28259 | 5' | -44.7 | NC_005902.1 | + | 28119 | 0.7 | 0.999612 |
Target: 5'- cAUCAUCGAUGACacau--GGAGUUAAa -3' miRNA: 3'- -UAGUAGUUACUGcacaauCCUCAAUU- -5' |
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28259 | 5' | -44.7 | NC_005902.1 | + | 72300 | 0.69 | 0.999763 |
Target: 5'- uAUUGUUAAUGAUGcUGcuUUAGGAGUUAAa -3' miRNA: 3'- -UAGUAGUUACUGC-AC--AAUCCUCAAUU- -5' |
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28259 | 5' | -44.7 | NC_005902.1 | + | 50430 | 0.69 | 0.999893 |
Target: 5'- cAUCAUCGAUGACauauuuGGAGUUAu -3' miRNA: 3'- -UAGUAGUUACUGcacaauCCUCAAUu -5' |
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28259 | 5' | -44.7 | NC_005902.1 | + | 94967 | 0.69 | 0.999893 |
Target: 5'- cAUCAUCAAUaAUGccUUAGGAGUUAAg -3' miRNA: 3'- -UAGUAGUUAcUGCacAAUCCUCAAUU- -5' |
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28259 | 5' | -44.7 | NC_005902.1 | + | 149286 | 0.68 | 0.99992 |
Target: 5'- cAUCAUCGAUGAUGccUUAGGAuUUAAa -3' miRNA: 3'- -UAGUAGUUACUGCacAAUCCUcAAUU- -5' |
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28259 | 5' | -44.7 | NC_005902.1 | + | 170216 | 0.68 | 0.999928 |
Target: 5'- cAUUAUCAAUGAUGgggcaucauuaacaaUGccUUAGGAGUUAAa -3' miRNA: 3'- -UAGUAGUUACUGC---------------AC--AAUCCUCAAUU- -5' |
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28259 | 5' | -44.7 | NC_005902.1 | + | 177692 | 0.68 | 0.99994 |
Target: 5'- uGUCAUCGAcaAUGUuUUAGGAGUUAAg -3' miRNA: 3'- -UAGUAGUUacUGCAcAAUCCUCAAUU- -5' |
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28259 | 5' | -44.7 | NC_005902.1 | + | 142446 | 0.68 | 0.99994 |
Target: 5'- uGUUAUCGAUGACauuUUAGGAGUUu- -3' miRNA: 3'- -UAGUAGUUACUGcacAAUCCUCAAuu -5' |
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28259 | 5' | -44.7 | NC_005902.1 | + | 135623 | 0.68 | 0.99994 |
Target: 5'- uGUCAUCGAUGAUGccUUAGGAaUUAAc -3' miRNA: 3'- -UAGUAGUUACUGCacAAUCCUcAAUU- -5' |
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28259 | 5' | -44.7 | NC_005902.1 | + | 162346 | 0.68 | 0.999955 |
Target: 5'- cGUCAUUAAUGAUGUGUUAGu------ -3' miRNA: 3'- -UAGUAGUUACUGCACAAUCcucaauu -5' |
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28259 | 5' | -44.7 | NC_005902.1 | + | 8264 | 0.68 | 0.999955 |
Target: 5'- cAUCAUUggUG-CGUG--AGGGGUUAAa -3' miRNA: 3'- -UAGUAGuuACuGCACaaUCCUCAAUU- -5' |
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28259 | 5' | -44.7 | NC_005902.1 | + | 81755 | 0.68 | 0.999955 |
Target: 5'- cGUCAUCAAUGAUGccUUAaGAGUUAAc -3' miRNA: 3'- -UAGUAGUUACUGCacAAUcCUCAAUU- -5' |
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28259 | 5' | -44.7 | NC_005902.1 | + | 95546 | 0.68 | 0.999955 |
Target: 5'- cGUCAUCGAUGAUGccUUAaGAGUUAAa -3' miRNA: 3'- -UAGUAGUUACUGCacAAUcCUCAAUU- -5' |
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28259 | 5' | -44.7 | NC_005902.1 | + | 110284 | 0.68 | 0.999967 |
Target: 5'- uGUCAUUGAUGGUGcuUUAGGAGUUAAg -3' miRNA: 3'- -UAGUAGUUACUGCacAAUCCUCAAUU- -5' |
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28259 | 5' | -44.7 | NC_005902.1 | + | 66970 | 0.68 | 0.999967 |
Target: 5'- cAUCGUUGAUGAUGUGU--GGAGcUAAu -3' miRNA: 3'- -UAGUAGUUACUGCACAauCCUCaAUU- -5' |
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28259 | 5' | -44.7 | NC_005902.1 | + | 12825 | 0.68 | 0.999971 |
Target: 5'- cAUUAUCAAUGACGcuuugucauugaugaUGU--GGAGUUAAa -3' miRNA: 3'- -UAGUAGUUACUGC---------------ACAauCCUCAAUU- -5' |
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28259 | 5' | -44.7 | NC_005902.1 | + | 71716 | 0.68 | 0.999976 |
Target: 5'- cAUCAUCAAUGACGaUGU--GGAaUUAAa -3' miRNA: 3'- -UAGUAGUUACUGC-ACAauCCUcAAUU- -5' |
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28259 | 5' | -44.7 | NC_005902.1 | + | 169090 | 0.67 | 0.999983 |
Target: 5'- cGUCGUUGAUGACaGUGU--GGAGUa-- -3' miRNA: 3'- -UAGUAGUUACUG-CACAauCCUCAauu -5' |
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28259 | 5' | -44.7 | NC_005902.1 | + | 127436 | 0.67 | 0.999988 |
Target: 5'- cAUCAUCAAUGAUGcGUa--GAGUUAAa -3' miRNA: 3'- -UAGUAGUUACUGCaCAaucCUCAAUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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