miRNA display CGI


Results 41 - 60 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28259 5' -44.7 NC_005902.1 + 182908 0.72 0.997451
Target:  5'- cAUUGUCAGUGACGUauacGGAGUUAAu -3'
miRNA:   3'- -UAGUAGUUACUGCAcaauCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 114776 0.72 0.997451
Target:  5'- uGUCAUCGGUGACGaUGUa--GAGUUAAa -3'
miRNA:   3'- -UAGUAGUUACUGC-ACAaucCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 106108 0.72 0.996951
Target:  5'- -gCAUUAAUGAUGccUUAGGAGUUAAa -3'
miRNA:   3'- uaGUAGUUACUGCacAAUCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 169921 0.72 0.995707
Target:  5'- uAUCAcCGAcGACGUGUUuGGGGUUAAa -3'
miRNA:   3'- -UAGUaGUUaCUGCACAAuCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 49917 0.72 0.995707
Target:  5'- uGUCAUUAAUGAUaGUGU--GGAGUUAAa -3'
miRNA:   3'- -UAGUAGUUACUG-CACAauCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 104179 0.73 0.994945
Target:  5'- cAUCAUCAAUaACGccUUAGGAGUUAAa -3'
miRNA:   3'- -UAGUAGUUAcUGCacAAUCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 36182 0.73 0.994945
Target:  5'- uGUCAUCAAcGAUGUuUUAGGAGUUu- -3'
miRNA:   3'- -UAGUAGUUaCUGCAcAAUCCUCAAuu -5'
28259 5' -44.7 NC_005902.1 + 172698 0.73 0.993092
Target:  5'- uGUUGUCAAUGAUGccUUAGGGGUUAAc -3'
miRNA:   3'- -UAGUAGUUACUGCacAAUCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 142118 0.74 0.990732
Target:  5'- uGUCAUCGAUGAUGcuUUAGGuGUUAAa -3'
miRNA:   3'- -UAGUAGUUACUGCacAAUCCuCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 91085 0.74 0.990732
Target:  5'- cAUUAUUGAUGAUGUGU--GGAGUUAAa -3'
miRNA:   3'- -UAGUAGUUACUGCACAauCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 143889 0.74 0.984149
Target:  5'- uAUUGUCAAUGACaUGUUuGGAGUUAAc -3'
miRNA:   3'- -UAGUAGUUACUGcACAAuCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 84067 0.75 0.979753
Target:  5'- cAUUAUCAAUGACGauUUAGGAGUa-- -3'
miRNA:   3'- -UAGUAGUUACUGCacAAUCCUCAauu -5'
28259 5' -44.7 NC_005902.1 + 24068 0.75 0.973643
Target:  5'- cAUCAUCAAUGAUacuauGUGUuauuaacgaugccuUAGGAGUUAAa -3'
miRNA:   3'- -UAGUAGUUACUG-----CACA--------------AUCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 42329 0.76 0.968339
Target:  5'- cAUCAUCAAUGACuGUgaaGUUGGGGGUa-- -3'
miRNA:   3'- -UAGUAGUUACUG-CA---CAAUCCUCAauu -5'
28259 5' -44.7 NC_005902.1 + 159714 0.76 0.968339
Target:  5'- cGUCAUUGAUGAUGccUUAGGAGUUAAu -3'
miRNA:   3'- -UAGUAGUUACUGCacAAUCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 71295 0.76 0.964886
Target:  5'- uAUUAUCAAUGAUGccUUGGGAGUUAGg -3'
miRNA:   3'- -UAGUAGUUACUGCacAAUCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 48201 0.76 0.961177
Target:  5'- uAUCAUCGAUGACGccUUAGGAGcUAAa -3'
miRNA:   3'- -UAGUAGUUACUGCacAAUCCUCaAUU- -5'
28259 5' -44.7 NC_005902.1 + 104298 0.76 0.957205
Target:  5'- cAUCAUUGAUGACgGUGUgaggugGGGGGUUAAa -3'
miRNA:   3'- -UAGUAGUUACUG-CACAa-----UCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 165816 0.77 0.94845
Target:  5'- cAUUAUCAAUGAUGccUUAGGAGUUAAc -3'
miRNA:   3'- -UAGUAGUUACUGCacAAUCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 90143 0.77 0.942164
Target:  5'- cGUCAUCAAUGACacaaaGUGUuguugauaaugccuUAGGAGUUAGa -3'
miRNA:   3'- -UAGUAGUUACUG-----CACA--------------AUCCUCAAUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.