miRNA display CGI


Results 61 - 80 of 392 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28261 3' -43 NC_005902.1 + 158336 0.73 0.998925
Target:  5'- -aUUAAUACCUAGGCUgcuAUAUACUaACa -3'
miRNA:   3'- gaAAUUGUGGAUUCGA---UAUAUGGgUG- -5'
28261 3' -43 NC_005902.1 + 158230 0.83 0.866695
Target:  5'- cCUUUAAUGCCUAAGCUAUAUACaaAUg -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 158121 0.77 0.982879
Target:  5'- cCUUUAAUACUUAAGCUAUAUACa--- -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGggug -5'
28261 3' -43 NC_005902.1 + 157852 0.91 0.478502
Target:  5'- aUUUAACACCUAAGCUAUAUAUuuGCu -3'
miRNA:   3'- gAAAUUGUGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 157230 0.91 0.488924
Target:  5'- cCUUUAACACCUAAGCUAUAUACaaaagagCACa -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGg------GUG- -5'
28261 3' -43 NC_005902.1 + 157182 0.73 0.999301
Target:  5'- -aUUAAUACCUAAGUUAUAUACa--- -3'
miRNA:   3'- gaAAUUGUGGAUUCGAUAUAUGggug -5'
28261 3' -43 NC_005902.1 + 157081 0.74 0.997641
Target:  5'- -gUUAACACCUAAGCUAUAcAgCauaGCa -3'
miRNA:   3'- gaAAUUGUGGAUUCGAUAUaUgGg--UG- -5'
28261 3' -43 NC_005902.1 + 156790 0.88 0.620278
Target:  5'- --cUAACACCUAAGCUAUAUACUUAUu -3'
miRNA:   3'- gaaAUUGUGGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 156551 0.92 0.46819
Target:  5'- uUUUAACACCUAAGCUAUAUAUUUACu -3'
miRNA:   3'- gAAAUUGUGGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 156433 0.9 0.520798
Target:  5'- uUUUAACACCUAAGCUAUAUACaaACa -3'
miRNA:   3'- gAAAUUGUGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 156341 0.7 0.99998
Target:  5'- uUUUAACAUUUAAGCUAUAUAUgaAUa -3'
miRNA:   3'- gAAAUUGUGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 155214 0.88 0.653964
Target:  5'- cCUUUAACAUCUAAGCUAUAUACaaACa -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 154917 0.81 0.917533
Target:  5'- uUUUAACAUCcAAGCUAUAUACUCAUu -3'
miRNA:   3'- gAAAUUGUGGaUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 154580 0.88 0.642742
Target:  5'- uUUUAACccuuuACCUAAGCUAUAUACUCACu -3'
miRNA:   3'- gAAAUUG-----UGGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 153648 0.67 1
Target:  5'- aUUUAACACUUAAaCUAUAUACgaACa -3'
miRNA:   3'- gAAAUUGUGGAUUcGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 153032 0.69 0.999998
Target:  5'- aCUUUuaAACAUUUAAGCUAUGUACaaAUg -3'
miRNA:   3'- -GAAA--UUGUGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 151289 0.82 0.8974
Target:  5'- -cUUAACACCUAAGCUAUAUAUauuuaguugCUACa -3'
miRNA:   3'- gaAAUUGUGGAUUCGAUAUAUG---------GGUG- -5'
28261 3' -43 NC_005902.1 + 151192 0.74 0.998388
Target:  5'- -gUUAACACCUAAGUUAUAUAUa--- -3'
miRNA:   3'- gaAAUUGUGGAUUCGAUAUAUGggug -5'
28261 3' -43 NC_005902.1 + 149800 0.86 0.752632
Target:  5'- uUUUAACACCUAAGUUAUGUACUauuCACu -3'
miRNA:   3'- gAAAUUGUGGAUUCGAUAUAUGG---GUG- -5'
28261 3' -43 NC_005902.1 + 149202 0.93 0.399469
Target:  5'- uUUUAAUACCUAAGCUAUAUACUCAUu -3'
miRNA:   3'- gAAAUUGUGGAUUCGAUAUAUGGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.