miRNA display CGI


Results 1 - 20 of 216 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28261 5' -40.8 NC_005902.1 + 44103 0.68 1
Target:  5'- -aGUgaGUAUAUAGUUUAGcUGUUAAa -3'
miRNA:   3'- aaCAaaCAUAUAUCGAAUCcACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 107183 0.66 1
Target:  5'- -----aGUAUAUAGCUUaAGG-GUUAAa -3'
miRNA:   3'- aacaaaCAUAUAUCGAA-UCCaCAAUU- -5'
28261 5' -40.8 NC_005902.1 + 173493 0.69 1
Target:  5'- cUUGUUUGUAUAUAaUUUAGGUaUUAAa -3'
miRNA:   3'- -AACAAACAUAUAUcGAAUCCAcAAUU- -5'
28261 5' -40.8 NC_005902.1 + 137782 0.69 1
Target:  5'- aUGUguaUAUAUAGCUUAaGUGUUAAa -3'
miRNA:   3'- aACAaacAUAUAUCGAAUcCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 78894 0.69 1
Target:  5'- cUUGUUUaUAUAUAGCUUagaGGGUGg--- -3'
miRNA:   3'- -AACAAAcAUAUAUCGAA---UCCACaauu -5'
28261 5' -40.8 NC_005902.1 + 94729 0.69 1
Target:  5'- -aGUgcGUAUAUAGUUUAaGUGUUAAa -3'
miRNA:   3'- aaCAaaCAUAUAUCGAAUcCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 146763 0.69 1
Target:  5'- -----aGUAUAUacauGGUUUAGGUGUUAGa -3'
miRNA:   3'- aacaaaCAUAUA----UCGAAUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 127504 0.69 1
Target:  5'- -aGUgaGUAUAUAGCUUcaGUGUUAAa -3'
miRNA:   3'- aaCAaaCAUAUAUCGAAucCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 139101 0.68 1
Target:  5'- aUGcUUGcAUAUAGCUUAGGUaUUAAc -3'
miRNA:   3'- aACaAACaUAUAUCGAAUCCAcAAUU- -5'
28261 5' -40.8 NC_005902.1 + 156585 0.68 1
Target:  5'- cUUGUUUaUAUAUAaUUUGGGUGUUAAa -3'
miRNA:   3'- -AACAAAcAUAUAUcGAAUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 100130 0.68 1
Target:  5'- aUGUUcaUAUAUAGCUUAGaUGUUAAa -3'
miRNA:   3'- aACAAacAUAUAUCGAAUCcACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 116973 0.66 1
Target:  5'- -------cAUAUuaAGCUUAGGUGUUAAc -3'
miRNA:   3'- aacaaacaUAUA--UCGAAUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 77137 0.68 1
Target:  5'- --aUUUGUAUAUAGCcUAGcUGUUAAa -3'
miRNA:   3'- aacAAACAUAUAUCGaAUCcACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 135218 0.68 1
Target:  5'- -aGUgaGUAUAUAGUUUAGaUGUUAAa -3'
miRNA:   3'- aaCAaaCAUAUAUCGAAUCcACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 102302 0.68 1
Target:  5'- uUUGUUUGUAUAUcaCUUAaGUGUUAAa -3'
miRNA:   3'- -AACAAACAUAUAucGAAUcCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 142513 0.67 1
Target:  5'- --aUUUGUAUAUAGgUUAGaUGUUAAa -3'
miRNA:   3'- aacAAACAUAUAUCgAAUCcACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 94023 0.67 1
Target:  5'- aUGUUUacucaUAUAUAGCUUAGGUauuuaaaaaGUUAAa -3'
miRNA:   3'- aACAAAc----AUAUAUCGAAUCCA---------CAAUU- -5'
28261 5' -40.8 NC_005902.1 + 98851 0.67 1
Target:  5'- cUUGUUUGUAUAU-GCaUAaGUGUUAAa -3'
miRNA:   3'- -AACAAACAUAUAuCGaAUcCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 178441 0.66 1
Target:  5'- -----aGUAUAUAaUUUAGGUGUUAAa -3'
miRNA:   3'- aacaaaCAUAUAUcGAAUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 92325 0.66 1
Target:  5'- cUUGUUc-UAUAUAGCUUAGGUa---- -3'
miRNA:   3'- -AACAAacAUAUAUCGAAUCCAcaauu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.