Results 41 - 60 of 226 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28267 | 3' | -44.5 | NC_005902.1 | + | 47234 | 0.78 | 0.930357 |
Target: 5'- aACCcUUUAACACCUAAGCUAUauACa -3' miRNA: 3'- gUGGaAAAUUGUGGGUUCGAUAcuUG- -5' |
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28267 | 3' | -44.5 | NC_005902.1 | + | 128770 | 0.78 | 0.941011 |
Target: 5'- aUACCcUUUAACACCUAAGCUAUauACu -3' miRNA: 3'- -GUGGaAAAUUGUGGGUUCGAUAcuUG- -5' |
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28267 | 3' | -44.5 | NC_005902.1 | + | 180612 | 0.78 | 0.941011 |
Target: 5'- uCGCUUuaauucUUUAACACCUAAGCUuauAUGAACa -3' miRNA: 3'- -GUGGA------AAAUUGUGGGUUCGA---UACUUG- -5' |
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28267 | 3' | -44.5 | NC_005902.1 | + | 127775 | 0.78 | 0.935825 |
Target: 5'- uUACCUUUUAACACUgAAGCUAUauACu -3' miRNA: 3'- -GUGGAAAAUUGUGGgUUCGAUAcuUG- -5' |
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28267 | 3' | -44.5 | NC_005902.1 | + | 143771 | 0.78 | 0.941011 |
Target: 5'- aUACCcUUUAACACCUAAGCUAUauACu -3' miRNA: 3'- -GUGGaAAAUUGUGGGUUCGAUAcuUG- -5' |
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28267 | 3' | -44.5 | NC_005902.1 | + | 182934 | 0.77 | 0.962828 |
Target: 5'- ---aUUUUAACACCUAAGCUAuauaUGAACa -3' miRNA: 3'- guggAAAAUUGUGGGUUCGAU----ACUUG- -5' |
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28267 | 3' | -44.5 | NC_005902.1 | + | 40965 | 0.77 | 0.962828 |
Target: 5'- uCACCcUUUAAUACCUAAGCUAUauACa -3' miRNA: 3'- -GUGGaAAAUUGUGGGUUCGAUAcuUG- -5' |
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28267 | 3' | -44.5 | NC_005902.1 | + | 97434 | 0.77 | 0.962828 |
Target: 5'- uUACCcUUUAACACCUAAGCUAUa--- -3' miRNA: 3'- -GUGGaAAAUUGUGGGUUCGAUAcuug -5' |
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28267 | 3' | -44.5 | NC_005902.1 | + | 172813 | 0.77 | 0.954909 |
Target: 5'- uUACCcUUUAACACCUAAGCUAuauaUGAGu -3' miRNA: 3'- -GUGGaAAAUUGUGGGUUCGAU----ACUUg -5' |
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28267 | 3' | -44.5 | NC_005902.1 | + | 108899 | 0.77 | 0.962828 |
Target: 5'- aACCUUUUAACAgCUAGGCUAUauACa -3' miRNA: 3'- gUGGAAAAUUGUgGGUUCGAUAcuUG- -5' |
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28267 | 3' | -44.5 | NC_005902.1 | + | 99555 | 0.77 | 0.954909 |
Target: 5'- aACCcUUUAACACCUAAGCUAUauACu -3' miRNA: 3'- gUGGaAAAUUGUGGGUUCGAUAcuUG- -5' |
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28267 | 3' | -44.5 | NC_005902.1 | + | 105262 | 0.77 | 0.962828 |
Target: 5'- uUACCcUUUAACACCUAAGCUAUa--- -3' miRNA: 3'- -GUGGaAAAUUGUGGGUUCGAUAcuug -5' |
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28267 | 3' | -44.5 | NC_005902.1 | + | 140684 | 0.77 | 0.959 |
Target: 5'- aACuCUUUUAACAUCCAAGCUAUaAAUa -3' miRNA: 3'- gUG-GAAAAUUGUGGGUUCGAUAcUUG- -5' |
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28267 | 3' | -44.5 | NC_005902.1 | + | 99982 | 0.76 | 0.975652 |
Target: 5'- uUACCccUUUAACAUCUAAGCUAuauaUGAACa -3' miRNA: 3'- -GUGGa-AAAUUGUGGGUUCGAU----ACUUG- -5' |
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28267 | 3' | -44.5 | NC_005902.1 | + | 170699 | 0.76 | 0.969723 |
Target: 5'- aACUcUUUAACACCUAAGCUAuauaUGAAUa -3' miRNA: 3'- gUGGaAAAUUGUGGGUUCGAU----ACUUG- -5' |
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28267 | 3' | -44.5 | NC_005902.1 | + | 13181 | 0.76 | 0.969723 |
Target: 5'- aACCcUUUAACACCUAAGCUAUa--- -3' miRNA: 3'- gUGGaAAAUUGUGGGUUCGAUAcuug -5' |
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28267 | 3' | -44.5 | NC_005902.1 | + | 184860 | 0.76 | 0.969723 |
Target: 5'- aACCcUUUAACACCUAAGCUGUa--- -3' miRNA: 3'- gUGGaAAAUUGUGGGUUCGAUAcuug -5' |
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28267 | 3' | -44.5 | NC_005902.1 | + | 169122 | 0.76 | 0.969723 |
Target: 5'- aACCcUUUAACACCUAAGCUAUa--- -3' miRNA: 3'- gUGGaAAAUUGUGGGUUCGAUAcuug -5' |
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28267 | 3' | -44.5 | NC_005902.1 | + | 60465 | 0.76 | 0.969723 |
Target: 5'- aACCcUUUAACACCUAAGCUAUa--- -3' miRNA: 3'- gUGGaAAAUUGUGGGUUCGAUAcuug -5' |
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28267 | 3' | -44.5 | NC_005902.1 | + | 120244 | 0.76 | 0.975652 |
Target: 5'- aACCcUUUAACACCUGAGCUAUauGCu -3' miRNA: 3'- gUGGaAAAUUGUGGGUUCGAUAcuUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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