miRNA display CGI


Results 1 - 20 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28267 3' -44.5 NC_005902.1 + 31085 1.12 0.028204
Target:  5'- uCACCUUUUAACACCCAAGCUAUGAACa -3'
miRNA:   3'- -GUGGAAAAUUGUGGGUUCGAUACUUG- -5'
28267 3' -44.5 NC_005902.1 + 18855 0.88 0.537717
Target:  5'- aACCUUUUAACACCUAAGCUAUauACg -3'
miRNA:   3'- gUGGAAAAUUGUGGGUUCGAUAcuUG- -5'
28267 3' -44.5 NC_005902.1 + 156429 0.88 0.537717
Target:  5'- aACCUUUUAACACCUAAGCUAUauACa -3'
miRNA:   3'- gUGGAAAAUUGUGGGUUCGAUAcuUG- -5'
28267 3' -44.5 NC_005902.1 + 44012 0.88 0.505738
Target:  5'- aUACCUUUUAACACCUAAGCUAUauACa -3'
miRNA:   3'- -GUGGAAAAUUGUGGGUUCGAUAcuUG- -5'
28267 3' -44.5 NC_005902.1 + 16888 0.88 0.526974
Target:  5'- --aCUUUUAACAUCUAAGCUAUGAACa -3'
miRNA:   3'- gugGAAAAUUGUGGGUUCGAUACUUG- -5'
28267 3' -44.5 NC_005902.1 + 105941 0.88 0.537717
Target:  5'- aACCUUUUAACACCUAAGCUAUauACa -3'
miRNA:   3'- gUGGAAAAUUGUGGGUUCGAUAcuUG- -5'
28267 3' -44.5 NC_005902.1 + 45076 0.87 0.570363
Target:  5'- uUACCUUUUAACACCUAAGCUAUauACu -3'
miRNA:   3'- -GUGGAAAAUUGUGGGUUCGAUAcuUG- -5'
28267 3' -44.5 NC_005902.1 + 51607 0.87 0.581358
Target:  5'- aACCcUUUAAUACCUAAGCUGUGAAUa -3'
miRNA:   3'- gUGGaAAAUUGUGGGUUCGAUACUUG- -5'
28267 3' -44.5 NC_005902.1 + 111228 0.86 0.6368
Target:  5'- aACCUUUUAACACCUAAGCUAUa--- -3'
miRNA:   3'- gUGGAAAAUUGUGGGUUCGAUAcuug -5'
28267 3' -44.5 NC_005902.1 + 49432 0.83 0.776937
Target:  5'- aUACCUUUUAACACCUAAGUUAUaaauagGGGCa -3'
miRNA:   3'- -GUGGAAAAUUGUGGGUUCGAUA------CUUG- -5'
28267 3' -44.5 NC_005902.1 + 137431 0.83 0.745954
Target:  5'- uCACCUUUUAACAUCUAAGCUAUacACu -3'
miRNA:   3'- -GUGGAAAAUUGUGGGUUCGAUAcuUG- -5'
28267 3' -44.5 NC_005902.1 + 154912 0.83 0.776937
Target:  5'- uCAUCUUUUAACAUCCAAGCUAUauACu -3'
miRNA:   3'- -GUGGAAAAUUGUGGGUUCGAUAcuUG- -5'
28267 3' -44.5 NC_005902.1 + 50041 0.82 0.816055
Target:  5'- uUACCcUUUAACACCUAAGCUAUGuuCa -3'
miRNA:   3'- -GUGGaAAAUUGUGGGUUCGAUACuuG- -5'
28267 3' -44.5 NC_005902.1 + 68931 0.82 0.816055
Target:  5'- uUACCUUUUAACACUUAAGCUAUauACa -3'
miRNA:   3'- -GUGGAAAAUUGUGGGUUCGAUAcuUG- -5'
28267 3' -44.5 NC_005902.1 + 52771 0.82 0.795867
Target:  5'- aACCUUUUAACACCUAAGUUauauaaaGUGAAUg -3'
miRNA:   3'- gUGGAAAAUUGUGGGUUCGA-------UACUUG- -5'
28267 3' -44.5 NC_005902.1 + 116630 0.82 0.825368
Target:  5'- aACUUUUUAACACCUAAGCUAUauACa -3'
miRNA:   3'- gUGGAAAAUUGUGGGUUCGAUAcuUG- -5'
28267 3' -44.5 NC_005902.1 + 118647 0.81 0.834474
Target:  5'- aACCUUUUAACACUUAAGCUAUauACa -3'
miRNA:   3'- gUGGAAAAUUGUGGGUUCGAUAcuUG- -5'
28267 3' -44.5 NC_005902.1 + 131663 0.81 0.843363
Target:  5'- aACCcUUUAACACCUAAGCUAuacauacacaaaUGAGCa -3'
miRNA:   3'- gUGGaAAAUUGUGGGUUCGAU------------ACUUG- -5'
28267 3' -44.5 NC_005902.1 + 36798 0.81 0.834474
Target:  5'- aACCUUUUAACACUUAAGCUAUacACa -3'
miRNA:   3'- gUGGAAAAUUGUGGGUUCGAUAcuUG- -5'
28267 3' -44.5 NC_005902.1 + 159739 0.81 0.843363
Target:  5'- aAUCUUUUAAUACCUAAGCUAuauauaaaUGAGCg -3'
miRNA:   3'- gUGGAAAAUUGUGGGUUCGAU--------ACUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.