miRNA display CGI


Results 1 - 20 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28267 3' -44.5 NC_005902.1 + 145043 0.68 0.999977
Target:  5'- uUAUUcUUUAGCACCUAAGCUauauGUGAGu -3'
miRNA:   3'- -GUGGaAAAUUGUGGGUUCGA----UACUUg -5'
28267 3' -44.5 NC_005902.1 + 119006 0.67 0.999992
Target:  5'- aUACCcUUUAACuCCUAAGCUAUauACu -3'
miRNA:   3'- -GUGGaAAAUUGuGGGUUCGAUAcuUG- -5'
28267 3' -44.5 NC_005902.1 + 107799 0.67 0.999992
Target:  5'- aACUcUUUAACAUCUAAGCUAUauACu -3'
miRNA:   3'- gUGGaAAAUUGUGGGUUCGAUAcuUG- -5'
28267 3' -44.5 NC_005902.1 + 151286 0.67 0.999992
Target:  5'- aAUCU--UAACACCUAAGCUAUa--- -3'
miRNA:   3'- gUGGAaaAUUGUGGGUUCGAUAcuug -5'
28267 3' -44.5 NC_005902.1 + 76084 0.68 0.999988
Target:  5'- aACCcUUUAAgACCUAAGCUAUa--- -3'
miRNA:   3'- gUGGaAAAUUgUGGGUUCGAUAcuug -5'
28267 3' -44.5 NC_005902.1 + 158118 0.68 0.999984
Target:  5'- aACCcUUUAAUACUUAAGCUAUauACa -3'
miRNA:   3'- gUGGaAAAUUGUGGGUUCGAUAcuUG- -5'
28267 3' -44.5 NC_005902.1 + 151174 0.68 0.999983
Target:  5'- aGCCUUaggaauuaaagggUUAACACCUAAGUUauauauagauguaGUGAAUg -3'
miRNA:   3'- gUGGAA-------------AAUUGUGGGUUCGA-------------UACUUG- -5'
28267 3' -44.5 NC_005902.1 + 153031 0.68 0.999977
Target:  5'- aACUUUUaAACAUUUAAGCUAUGuACa -3'
miRNA:   3'- gUGGAAAaUUGUGGGUUCGAUACuUG- -5'
28267 3' -44.5 NC_005902.1 + 81050 0.68 0.999958
Target:  5'- aAUUUUUUAACAUCUAAGCUAU--ACa -3'
miRNA:   3'- gUGGAAAAUUGUGGGUUCGAUAcuUG- -5'
28267 3' -44.5 NC_005902.1 + 63234 0.67 0.999994
Target:  5'- uUACCcUUUAACcCCUAAGCUAUauACu -3'
miRNA:   3'- -GUGGaAAAUUGuGGGUUCGAUAcuUG- -5'
28267 3' -44.5 NC_005902.1 + 134576 0.67 0.999994
Target:  5'- uUACCcUUUAACAUUUAAGCUAUauACa -3'
miRNA:   3'- -GUGGaAAAUUGUGGGUUCGAUAcuUG- -5'
28267 3' -44.5 NC_005902.1 + 184734 0.67 0.999996
Target:  5'- aCACCUUaggaauuaauccUAACACCUGAGCUAUa--- -3'
miRNA:   3'- -GUGGAAa-----------AUUGUGGGUUCGAUAcuug -5'
28267 3' -44.5 NC_005902.1 + 29607 0.66 0.999999
Target:  5'- uUACCcUUUAACAUUUAAGCUAUauACu -3'
miRNA:   3'- -GUGGaAAAUUGUGGGUUCGAUAcuUG- -5'
28267 3' -44.5 NC_005902.1 + 135960 0.66 0.999999
Target:  5'- -----gUUAAUACCUAAGCUauauacaaGUGAGCa -3'
miRNA:   3'- guggaaAAUUGUGGGUUCGA--------UACUUG- -5'
28267 3' -44.5 NC_005902.1 + 5997 0.66 0.999999
Target:  5'- aUACuCUUUUAACAaCCGAGCUGUu--- -3'
miRNA:   3'- -GUG-GAAAAUUGUgGGUUCGAUAcuug -5'
28267 3' -44.5 NC_005902.1 + 67357 0.66 0.999999
Target:  5'- gUACCUUUUAACAaCUAAGUUAgauACa -3'
miRNA:   3'- -GUGGAAAAUUGUgGGUUCGAUacuUG- -5'
28267 3' -44.5 NC_005902.1 + 124388 0.66 0.999998
Target:  5'- aACUcUUUAACAUCUAAGCUAUa--- -3'
miRNA:   3'- gUGGaAAAUUGUGGGUUCGAUAcuug -5'
28267 3' -44.5 NC_005902.1 + 90057 0.66 0.999998
Target:  5'- aACCc-UUAACACCUAAGUUAUauACa -3'
miRNA:   3'- gUGGaaAAUUGUGGGUUCGAUAcuUG- -5'
28267 3' -44.5 NC_005902.1 + 100667 0.67 0.999997
Target:  5'- uUACCcUUUAAUAUCUAAGCUAUa--- -3'
miRNA:   3'- -GUGGaAAAUUGUGGGUUCGAUAcuug -5'
28267 3' -44.5 NC_005902.1 + 133832 0.67 0.999996
Target:  5'- uCACCcUUUAACACCUAAGUg------ -3'
miRNA:   3'- -GUGGaAAAUUGUGGGUUCGauacuug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.