miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28268 3' -42.9 NC_005902.1 + 1483 0.72 0.999743
Target:  5'- cCCuUUAAAUCCuAAGGCUUAUAUgaGUa -3'
miRNA:   3'- -GGuAAUUUAGG-UUCCGAGUAUGaaCA- -5'
28268 3' -42.9 NC_005902.1 + 8631 0.78 0.979212
Target:  5'- cCCuUUAAAUCUuauGGCUUAUACUUGUu -3'
miRNA:   3'- -GGuAAUUUAGGuu-CCGAGUAUGAACA- -5'
28268 3' -42.9 NC_005902.1 + 10244 0.7 0.99999
Target:  5'- -gAUUAAAuUCUAAGGCUUAUACUc-- -3'
miRNA:   3'- ggUAAUUU-AGGUUCCGAGUAUGAaca -5'
28268 3' -42.9 NC_005902.1 + 10304 0.67 1
Target:  5'- aCCuuUUAAAUCCuaaaGCUCAuUACUUGUu -3'
miRNA:   3'- -GGu-AAUUUAGGuuc-CGAGU-AUGAACA- -5'
28268 3' -42.9 NC_005902.1 + 17640 0.69 0.999998
Target:  5'- cCCuUUAAAccCUAAGGCUUAUACUUa- -3'
miRNA:   3'- -GGuAAUUUa-GGUUCCGAGUAUGAAca -5'
28268 3' -42.9 NC_005902.1 + 22554 0.76 0.995514
Target:  5'- uCCuUUAAAUCCuAAGGCU-AUACUUGUu -3'
miRNA:   3'- -GGuAAUUUAGG-UUCCGAgUAUGAACA- -5'
28268 3' -42.9 NC_005902.1 + 24157 1.11 0.05092
Target:  5'- cCCAUUAAAUCCAAGGCUCAUACUUGUu -3'
miRNA:   3'- -GGUAAUUUAGGUUCCGAGUAUGAACA- -5'
28268 3' -42.9 NC_005902.1 + 27865 0.82 0.907863
Target:  5'- cCCuUUAAAUCuUAAGGCUUAUACUUGUu -3'
miRNA:   3'- -GGuAAUUUAG-GUUCCGAGUAUGAACA- -5'
28268 3' -42.9 NC_005902.1 + 28929 0.66 1
Target:  5'- cCCuUUAAAUCCuaaGCUUAUACUUa- -3'
miRNA:   3'- -GGuAAUUUAGGuucCGAGUAUGAAca -5'
28268 3' -42.9 NC_005902.1 + 33085 0.67 1
Target:  5'- --uUUAAAUCCuAAGGCUUAUAUa--- -3'
miRNA:   3'- gguAAUUUAGG-UUCCGAGUAUGaaca -5'
28268 3' -42.9 NC_005902.1 + 36242 0.78 0.981548
Target:  5'- --uUUAAAUCuUAAGGCUUAUACUUGUu -3'
miRNA:   3'- gguAAUUUAG-GUUCCGAGUAUGAACA- -5'
28268 3' -42.9 NC_005902.1 + 36317 0.72 0.999883
Target:  5'- --uUUAAAUCCuAAGGCUUAUACaaGUg -3'
miRNA:   3'- gguAAUUUAGG-UUCCGAGUAUGaaCA- -5'
28268 3' -42.9 NC_005902.1 + 46256 0.71 0.999973
Target:  5'- cCCuUUAAAUCCuAAGGCUUAUAUa--- -3'
miRNA:   3'- -GGuAAUUUAGG-UUCCGAGUAUGaaca -5'
28268 3' -42.9 NC_005902.1 + 48456 0.71 0.999964
Target:  5'- --------cCUAAGGCUUAUACUUGUu -3'
miRNA:   3'- gguaauuuaGGUUCCGAGUAUGAACA- -5'
28268 3' -42.9 NC_005902.1 + 49590 0.75 0.997319
Target:  5'- -gAUUAAAcaCUAAGGCUUAUACUUGUu -3'
miRNA:   3'- ggUAAUUUa-GGUUCCGAGUAUGAACA- -5'
28268 3' -42.9 NC_005902.1 + 68999 0.68 0.999999
Target:  5'- --uUUAAAUCCuAAGGCUUAUACc--- -3'
miRNA:   3'- gguAAUUUAGG-UUCCGAGUAUGaaca -5'
28268 3' -42.9 NC_005902.1 + 84873 0.71 0.999951
Target:  5'- uCCAUUAAAUCuUAAGGCUUAaAUgagUGUa -3'
miRNA:   3'- -GGUAAUUUAG-GUUCCGAGUaUGa--ACA- -5'
28268 3' -42.9 NC_005902.1 + 90543 0.68 1
Target:  5'- uCCuUUGAAUCUuaaaGCUUAUACUUGUu -3'
miRNA:   3'- -GGuAAUUUAGGuuc-CGAGUAUGAACA- -5'
28268 3' -42.9 NC_005902.1 + 90700 0.76 0.993834
Target:  5'- aCCAuUUAAAUCCuAAGGCUUAUACa--- -3'
miRNA:   3'- -GGU-AAUUUAGG-UUCCGAGUAUGaaca -5'
28268 3' -42.9 NC_005902.1 + 91164 0.7 0.999986
Target:  5'- gUAUUAAAggguaaaauccUCUAAGGCUUAUACUUa- -3'
miRNA:   3'- gGUAAUUU-----------AGGUUCCGAGUAUGAAca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.