Results 1 - 20 of 41 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28268 | 3' | -42.9 | NC_005902.1 | + | 139743 | 0.87 | 0.716748 |
Target: 5'- uCCuUUAAAUCCuAAGGCUUAUACUUGUu -3' miRNA: 3'- -GGuAAUUUAGG-UUCCGAGUAUGAACA- -5' |
|||||||
28268 | 3' | -42.9 | NC_005902.1 | + | 10244 | 0.7 | 0.99999 |
Target: 5'- -gAUUAAAuUCUAAGGCUUAUACUc-- -3' miRNA: 3'- ggUAAUUU-AGGUUCCGAGUAUGAaca -5' |
|||||||
28268 | 3' | -42.9 | NC_005902.1 | + | 166198 | 0.71 | 0.999951 |
Target: 5'- gUAUUGcuuuAAUUCAuaAGGCUUAUACUUGUu -3' miRNA: 3'- gGUAAU----UUAGGU--UCCGAGUAUGAACA- -5' |
|||||||
28268 | 3' | -42.9 | NC_005902.1 | + | 100385 | 0.73 | 0.999339 |
Target: 5'- -gGUUAAAUCCuAAGGCUUAUAUgagUGa -3' miRNA: 3'- ggUAAUUUAGG-UUCCGAGUAUGa--ACa -5' |
|||||||
28268 | 3' | -42.9 | NC_005902.1 | + | 143769 | 0.76 | 0.995514 |
Target: 5'- -gGUUAAGUCCuAAGGCUUAUACaaGUg -3' miRNA: 3'- ggUAAUUUAGG-UUCCGAGUAUGaaCA- -5' |
|||||||
28268 | 3' | -42.9 | NC_005902.1 | + | 36242 | 0.78 | 0.981548 |
Target: 5'- --uUUAAAUCuUAAGGCUUAUACUUGUu -3' miRNA: 3'- gguAAUUUAG-GUUCCGAGUAUGAACA- -5' |
|||||||
28268 | 3' | -42.9 | NC_005902.1 | + | 173824 | 0.67 | 1 |
Target: 5'- cCCuUUAAAuUCUAAaGCUCAUAUUUGUu -3' miRNA: 3'- -GGuAAUUU-AGGUUcCGAGUAUGAACA- -5' |
|||||||
28268 | 3' | -42.9 | NC_005902.1 | + | 33085 | 0.67 | 1 |
Target: 5'- --uUUAAAUCCuAAGGCUUAUAUa--- -3' miRNA: 3'- gguAAUUUAGG-UUCCGAGUAUGaaca -5' |
|||||||
28268 | 3' | -42.9 | NC_005902.1 | + | 90543 | 0.68 | 1 |
Target: 5'- uCCuUUGAAUCUuaaaGCUUAUACUUGUu -3' miRNA: 3'- -GGuAAUUUAGGuuc-CGAGUAUGAACA- -5' |
|||||||
28268 | 3' | -42.9 | NC_005902.1 | + | 91164 | 0.7 | 0.999986 |
Target: 5'- gUAUUAAAggguaaaauccUCUAAGGCUUAUACUUa- -3' miRNA: 3'- gGUAAUUU-----------AGGUUCCGAGUAUGAAca -5' |
|||||||
28268 | 3' | -42.9 | NC_005902.1 | + | 143484 | 0.73 | 0.999339 |
Target: 5'- cCCuUUAAAUCCuAAGGCUUAUAUgagUGa -3' miRNA: 3'- -GGuAAUUUAGG-UUCCGAGUAUGa--ACa -5' |
|||||||
28268 | 3' | -42.9 | NC_005902.1 | + | 184517 | 0.87 | 0.716748 |
Target: 5'- uCCuUUAAAUCCuAAGGCUUAUACUUGUu -3' miRNA: 3'- -GGuAAUUUAGG-UUCCGAGUAUGAACA- -5' |
|||||||
28268 | 3' | -42.9 | NC_005902.1 | + | 97500 | 0.68 | 1 |
Target: 5'- -gGUUAAAUCuCAAGGCUUguGUACUc-- -3' miRNA: 3'- ggUAAUUUAG-GUUCCGAG--UAUGAaca -5' |
|||||||
28268 | 3' | -42.9 | NC_005902.1 | + | 161843 | 0.84 | 0.828093 |
Target: 5'- cUCAUUAAAUCuUAAGGCUCAUACaUGUg -3' miRNA: 3'- -GGUAAUUUAG-GUUCCGAGUAUGaACA- -5' |
|||||||
28268 | 3' | -42.9 | NC_005902.1 | + | 48456 | 0.71 | 0.999964 |
Target: 5'- --------cCUAAGGCUUAUACUUGUu -3' miRNA: 3'- gguaauuuaGGUUCCGAGUAUGAACA- -5' |
|||||||
28268 | 3' | -42.9 | NC_005902.1 | + | 10304 | 0.67 | 1 |
Target: 5'- aCCuuUUAAAUCCuaaaGCUCAuUACUUGUu -3' miRNA: 3'- -GGu-AAUUUAGGuuc-CGAGU-AUGAACA- -5' |
|||||||
28268 | 3' | -42.9 | NC_005902.1 | + | 28929 | 0.66 | 1 |
Target: 5'- cCCuUUAAAUCCuaaGCUUAUACUUa- -3' miRNA: 3'- -GGuAAUUUAGGuucCGAGUAUGAAca -5' |
|||||||
28268 | 3' | -42.9 | NC_005902.1 | + | 100277 | 0.79 | 0.970887 |
Target: 5'- uCCuUUAAAUCCuAAGGCUUAUACUUa- -3' miRNA: 3'- -GGuAAUUUAGG-UUCCGAGUAUGAAca -5' |
|||||||
28268 | 3' | -42.9 | NC_005902.1 | + | 68999 | 0.68 | 0.999999 |
Target: 5'- --uUUAAAUCCuAAGGCUUAUACc--- -3' miRNA: 3'- gguAAUUUAGG-UUCCGAGUAUGaaca -5' |
|||||||
28268 | 3' | -42.9 | NC_005902.1 | + | 90700 | 0.76 | 0.993834 |
Target: 5'- aCCAuUUAAAUCCuAAGGCUUAUACa--- -3' miRNA: 3'- -GGU-AAUUUAGG-UUCCGAGUAUGaaca -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home