miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28268 3' -42.9 NC_005902.1 + 107373 0.87 0.727537
Target:  5'- cCCuUUAAAUCCuAGGGCUUAUACUUGUu -3'
miRNA:   3'- -GGuAAUUUAGG-UUCCGAGUAUGAACA- -5'
28268 3' -42.9 NC_005902.1 + 95457 0.76 0.995514
Target:  5'- cCCuUUAAAUCCuAAGGCUUAUACaaGUa -3'
miRNA:   3'- -GGuAAUUUAGG-UUCCGAGUAUGaaCA- -5'
28268 3' -42.9 NC_005902.1 + 22554 0.76 0.995514
Target:  5'- uCCuUUAAAUCCuAAGGCU-AUACUUGUu -3'
miRNA:   3'- -GGuAAUUUAGG-UUCCGAgUAUGAACA- -5'
28268 3' -42.9 NC_005902.1 + 90700 0.76 0.993834
Target:  5'- aCCAuUUAAAUCCuAAGGCUUAUACa--- -3'
miRNA:   3'- -GGU-AAUUUAGG-UUCCGAGUAUGaaca -5'
28268 3' -42.9 NC_005902.1 + 152914 0.78 0.983682
Target:  5'- aCCuuUUAAAUCCuAAGGCUUAUACUUa- -3'
miRNA:   3'- -GGu-AAUUUAGG-UUCCGAGUAUGAAca -5'
28268 3' -42.9 NC_005902.1 + 8631 0.78 0.979212
Target:  5'- cCCuUUAAAUCUuauGGCUUAUACUUGUu -3'
miRNA:   3'- -GGuAAUUUAGGuu-CCGAGUAUGAACA- -5'
28268 3' -42.9 NC_005902.1 + 120373 0.79 0.964152
Target:  5'- cCCuUUAAAUCCuAAGGCUUAUACUUa- -3'
miRNA:   3'- -GGuAAUUUAGG-UUCCGAGUAUGAAca -5'
28268 3' -42.9 NC_005902.1 + 173340 0.81 0.932252
Target:  5'- cCCGUUAAAUCuUAAGGCUUAUACUg-- -3'
miRNA:   3'- -GGUAAUUUAG-GUUCCGAGUAUGAaca -5'
28268 3' -42.9 NC_005902.1 + 27865 0.82 0.907863
Target:  5'- cCCuUUAAAUCuUAAGGCUUAUACUUGUu -3'
miRNA:   3'- -GGuAAUUUAG-GUUCCGAGUAUGAACA- -5'
28268 3' -42.9 NC_005902.1 + 175692 0.76 0.995514
Target:  5'- aCCuuUUAAAUCCuAAGGCUUAUACgaGUa -3'
miRNA:   3'- -GGu-AAUUUAGG-UUCCGAGUAUGaaCA- -5'
28268 3' -42.9 NC_005902.1 + 49590 0.75 0.997319
Target:  5'- -gAUUAAAcaCUAAGGCUUAUACUUGUu -3'
miRNA:   3'- ggUAAUUUa-GGUUCCGAGUAUGAACA- -5'
28268 3' -42.9 NC_005902.1 + 135650 0.73 0.999339
Target:  5'- cCCuUUAAAUCCuAAGGCUUAUAUgagUGa -3'
miRNA:   3'- -GGuAAUUUAGG-UUCCGAGUAUGa--ACa -5'
28268 3' -42.9 NC_005902.1 + 131072 0.7 0.999981
Target:  5'- -gGUUAAAuUCUAAGGCUUAUACaaGUa -3'
miRNA:   3'- ggUAAUUU-AGGUUCCGAGUAUGaaCA- -5'
28268 3' -42.9 NC_005902.1 + 46256 0.71 0.999973
Target:  5'- cCCuUUAAAUCCuAAGGCUUAUAUa--- -3'
miRNA:   3'- -GGuAAUUUAGG-UUCCGAGUAUGaaca -5'
28268 3' -42.9 NC_005902.1 + 84873 0.71 0.999951
Target:  5'- uCCAUUAAAUCuUAAGGCUUAaAUgagUGUa -3'
miRNA:   3'- -GGUAAUUUAG-GUUCCGAGUaUGa--ACA- -5'
28268 3' -42.9 NC_005902.1 + 133562 0.72 0.999883
Target:  5'- cCCuUUAAAUCCuAGGGCUUAUAUUcGUu -3'
miRNA:   3'- -GGuAAUUUAGG-UUCCGAGUAUGAaCA- -5'
28268 3' -42.9 NC_005902.1 + 36317 0.72 0.999883
Target:  5'- --uUUAAAUCCuAAGGCUUAUACaaGUg -3'
miRNA:   3'- gguAAUUUAGG-UUCCGAGUAUGaaCA- -5'
28268 3' -42.9 NC_005902.1 + 1483 0.72 0.999743
Target:  5'- cCCuUUAAAUCCuAAGGCUUAUAUgaGUa -3'
miRNA:   3'- -GGuAAUUUAGG-UUCCGAGUAUGaaCA- -5'
28268 3' -42.9 NC_005902.1 + 139015 0.72 0.999743
Target:  5'- --uUUAAAUCuUAAGGUUUAUACUUGUu -3'
miRNA:   3'- gguAAUUUAG-GUUCCGAGUAUGAACA- -5'
28268 3' -42.9 NC_005902.1 + 122853 0.72 0.999743
Target:  5'- aCCuuUUAAAUCCuAAGGCUUAUAUUUa- -3'
miRNA:   3'- -GGu-AAUUUAGG-UUCCGAGUAUGAAca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.