Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28268 | 3' | -42.9 | NC_005902.1 | + | 184517 | 0.87 | 0.716748 |
Target: 5'- uCCuUUAAAUCCuAAGGCUUAUACUUGUu -3' miRNA: 3'- -GGuAAUUUAGG-UUCCGAGUAUGAACA- -5' |
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28268 | 3' | -42.9 | NC_005902.1 | + | 175692 | 0.76 | 0.995514 |
Target: 5'- aCCuuUUAAAUCCuAAGGCUUAUACgaGUa -3' miRNA: 3'- -GGu-AAUUUAGG-UUCCGAGUAUGaaCA- -5' |
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28268 | 3' | -42.9 | NC_005902.1 | + | 173824 | 0.67 | 1 |
Target: 5'- cCCuUUAAAuUCUAAaGCUCAUAUUUGUu -3' miRNA: 3'- -GGuAAUUU-AGGUUcCGAGUAUGAACA- -5' |
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28268 | 3' | -42.9 | NC_005902.1 | + | 173340 | 0.81 | 0.932252 |
Target: 5'- cCCGUUAAAUCuUAAGGCUUAUACUg-- -3' miRNA: 3'- -GGUAAUUUAG-GUUCCGAGUAUGAaca -5' |
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28268 | 3' | -42.9 | NC_005902.1 | + | 166198 | 0.71 | 0.999951 |
Target: 5'- gUAUUGcuuuAAUUCAuaAGGCUUAUACUUGUu -3' miRNA: 3'- gGUAAU----UUAGGU--UCCGAGUAUGAACA- -5' |
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28268 | 3' | -42.9 | NC_005902.1 | + | 161843 | 0.84 | 0.828093 |
Target: 5'- cUCAUUAAAUCuUAAGGCUCAUACaUGUg -3' miRNA: 3'- -GGUAAUUUAG-GUUCCGAGUAUGaACA- -5' |
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28268 | 3' | -42.9 | NC_005902.1 | + | 152914 | 0.78 | 0.983682 |
Target: 5'- aCCuuUUAAAUCCuAAGGCUUAUACUUa- -3' miRNA: 3'- -GGu-AAUUUAGG-UUCCGAGUAUGAAca -5' |
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28268 | 3' | -42.9 | NC_005902.1 | + | 143769 | 0.76 | 0.995514 |
Target: 5'- -gGUUAAGUCCuAAGGCUUAUACaaGUg -3' miRNA: 3'- ggUAAUUUAGG-UUCCGAGUAUGaaCA- -5' |
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28268 | 3' | -42.9 | NC_005902.1 | + | 143484 | 0.73 | 0.999339 |
Target: 5'- cCCuUUAAAUCCuAAGGCUUAUAUgagUGa -3' miRNA: 3'- -GGuAAUUUAGG-UUCCGAGUAUGa--ACa -5' |
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28268 | 3' | -42.9 | NC_005902.1 | + | 139743 | 0.87 | 0.716748 |
Target: 5'- uCCuUUAAAUCCuAAGGCUUAUACUUGUu -3' miRNA: 3'- -GGuAAUUUAGG-UUCCGAGUAUGAACA- -5' |
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28268 | 3' | -42.9 | NC_005902.1 | + | 139015 | 0.72 | 0.999743 |
Target: 5'- --uUUAAAUCuUAAGGUUUAUACUUGUu -3' miRNA: 3'- gguAAUUUAG-GUUCCGAGUAUGAACA- -5' |
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28268 | 3' | -42.9 | NC_005902.1 | + | 135650 | 0.73 | 0.999339 |
Target: 5'- cCCuUUAAAUCCuAAGGCUUAUAUgagUGa -3' miRNA: 3'- -GGuAAUUUAGG-UUCCGAGUAUGa--ACa -5' |
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28268 | 3' | -42.9 | NC_005902.1 | + | 133562 | 0.72 | 0.999883 |
Target: 5'- cCCuUUAAAUCCuAGGGCUUAUAUUcGUu -3' miRNA: 3'- -GGuAAUUUAGG-UUCCGAGUAUGAaCA- -5' |
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28268 | 3' | -42.9 | NC_005902.1 | + | 131072 | 0.7 | 0.999981 |
Target: 5'- -gGUUAAAuUCUAAGGCUUAUACaaGUa -3' miRNA: 3'- ggUAAUUU-AGGUUCCGAGUAUGaaCA- -5' |
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28268 | 3' | -42.9 | NC_005902.1 | + | 122853 | 0.72 | 0.999743 |
Target: 5'- aCCuuUUAAAUCCuAAGGCUUAUAUUUa- -3' miRNA: 3'- -GGu-AAUUUAGG-UUCCGAGUAUGAAca -5' |
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28268 | 3' | -42.9 | NC_005902.1 | + | 120373 | 0.79 | 0.964152 |
Target: 5'- cCCuUUAAAUCCuAAGGCUUAUACUUa- -3' miRNA: 3'- -GGuAAUUUAGG-UUCCGAGUAUGAAca -5' |
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28268 | 3' | -42.9 | NC_005902.1 | + | 107373 | 0.87 | 0.727537 |
Target: 5'- cCCuUUAAAUCCuAGGGCUUAUACUUGUu -3' miRNA: 3'- -GGuAAUUUAGG-UUCCGAGUAUGAACA- -5' |
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28268 | 3' | -42.9 | NC_005902.1 | + | 100385 | 0.73 | 0.999339 |
Target: 5'- -gGUUAAAUCCuAAGGCUUAUAUgagUGa -3' miRNA: 3'- ggUAAUUUAGG-UUCCGAGUAUGa--ACa -5' |
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28268 | 3' | -42.9 | NC_005902.1 | + | 100277 | 0.79 | 0.970887 |
Target: 5'- uCCuUUAAAUCCuAAGGCUUAUACUUa- -3' miRNA: 3'- -GGuAAUUUAGG-UUCCGAGUAUGAAca -5' |
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28268 | 3' | -42.9 | NC_005902.1 | + | 97500 | 0.68 | 1 |
Target: 5'- -gGUUAAAUCuCAAGGCUUguGUACUc-- -3' miRNA: 3'- ggUAAUUUAG-GUUCCGAG--UAUGAaca -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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