miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28268 5' -41.7 NC_005902.1 + 88545 0.66 1
Target:  5'- aCACA------AGCCUUGAGAUUUAAc -3'
miRNA:   3'- aGUGUacauacUCGGAAUUCUAAAUU- -5'
28268 5' -41.7 NC_005902.1 + 169633 0.68 1
Target:  5'- gCACAcuUGUAUaaAGCUUUGGGAUUUAAu -3'
miRNA:   3'- aGUGU--ACAUAc-UCGGAAUUCUAAAUU- -5'
28268 5' -41.7 NC_005902.1 + 177401 0.67 1
Target:  5'- aUCGCAaacaaGUAUaAGCCaUAAGAUUUAAa -3'
miRNA:   3'- -AGUGUa----CAUAcUCGGaAUUCUAAAUU- -5'
28268 5' -41.7 NC_005902.1 + 99692 0.69 1
Target:  5'- cCACAuUGUugAUGAcGCCUUAGGAaUUAAa -3'
miRNA:   3'- aGUGU-ACA--UACU-CGGAAUUCUaAAUU- -5'
28268 5' -41.7 NC_005902.1 + 139779 0.67 1
Target:  5'- cUCAUuuaUAUaAGCCUUAGGAUUUAAa -3'
miRNA:   3'- -AGUGuacAUAcUCGGAAUUCUAAAUU- -5'
28268 5' -41.7 NC_005902.1 + 168398 0.68 1
Target:  5'- -aAUAaGUAUaAGCCUUAGGGUUUAAa -3'
miRNA:   3'- agUGUaCAUAcUCGGAAUUCUAAAUU- -5'
28268 5' -41.7 NC_005902.1 + 170674 0.68 1
Target:  5'- cUCACuuAUGUA--AGCUUUAGGGUUUAAc -3'
miRNA:   3'- -AGUG--UACAUacUCGGAAUUCUAAAUU- -5'
28268 5' -41.7 NC_005902.1 + 42328 0.66 1
Target:  5'- uUUGCAUcGU-UGAuaauGCCUUAAGAUUUAAa -3'
miRNA:   3'- -AGUGUA-CAuACU----CGGAAUUCUAAAUU- -5'
28268 5' -41.7 NC_005902.1 + 184557 0.66 1
Target:  5'- cUCAUAUa----AGCCUUAGGAUUUAAa -3'
miRNA:   3'- -AGUGUAcauacUCGGAAUUCUAAAUU- -5'
28268 5' -41.7 NC_005902.1 + 69154 0.66 1
Target:  5'- cUCACuUGUAU-AGUCUUAGGAaUUAAa -3'
miRNA:   3'- -AGUGuACAUAcUCGGAAUUCUaAAUU- -5'
28268 5' -41.7 NC_005902.1 + 95540 0.66 1
Target:  5'- cCACAUcGUcaucgAUGAuGCCUUAAGAgUUAAa -3'
miRNA:   3'- aGUGUA-CA-----UACU-CGGAAUUCUaAAUU- -5'
28268 5' -41.7 NC_005902.1 + 17723 0.66 1
Target:  5'- cCACGUugcgAUGAuGCCUUAGGAaUUAAa -3'
miRNA:   3'- aGUGUAca--UACU-CGGAAUUCUaAAUU- -5'
28268 5' -41.7 NC_005902.1 + 156493 0.7 0.999999
Target:  5'- uUCACAUcauugAUGAuGCCUUAAGAgUUAAa -3'
miRNA:   3'- -AGUGUAca---UACU-CGGAAUUCUaAAUU- -5'
28268 5' -41.7 NC_005902.1 + 173374 0.7 0.999999
Target:  5'- cUCACuUGUAU--GUCUUAAGAUUUAAa -3'
miRNA:   3'- -AGUGuACAUAcuCGGAAUUCUAAAUU- -5'
28268 5' -41.7 NC_005902.1 + 17676 0.69 0.999999
Target:  5'- uUCACuuaUAUaAGCCUUAGGGUUUAAa -3'
miRNA:   3'- -AGUGuacAUAcUCGGAAUUCUAAAUU- -5'
28268 5' -41.7 NC_005902.1 + 149285 0.7 0.999999
Target:  5'- aCAuCAUcgAUGAuGCCUUAGGAUUUAAa -3'
miRNA:   3'- aGU-GUAcaUACU-CGGAAUUCUAAAUU- -5'
28268 5' -41.7 NC_005902.1 + 85653 0.7 0.999998
Target:  5'- uUCACucaUAUaAGCCUUAGGAUUUAAc -3'
miRNA:   3'- -AGUGuacAUAcUCGGAAUUCUAAAUU- -5'
28268 5' -41.7 NC_005902.1 + 85761 0.7 0.999998
Target:  5'- -aAUAaGUAUaAGCCUUAGGAUUUAAa -3'
miRNA:   3'- agUGUaCAUAcUCGGAAUUCUAAAUU- -5'
28268 5' -41.7 NC_005902.1 + 33122 0.7 0.999998
Target:  5'- -aAUAaGUAUaAGCCUUAGGAUUUAAa -3'
miRNA:   3'- agUGUaCAUAcUCGGAAUUCUAAAUU- -5'
28268 5' -41.7 NC_005902.1 + 65665 0.7 0.999998
Target:  5'- -aAUAaGUAUaAGCCUUAGGAUUUAAa -3'
miRNA:   3'- agUGUaCAUAcUCGGAAUUCUAAAUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.