Results 41 - 48 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28268 | 5' | -41.7 | NC_005902.1 | + | 139052 | 0.76 | 0.997814 |
Target: 5'- ---aGUGUAUaAGCCUUAAGAUUUAAa -3' miRNA: 3'- agugUACAUAcUCGGAAUUCUAAAUU- -5' |
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28268 | 5' | -41.7 | NC_005902.1 | + | 31319 | 0.76 | 0.996225 |
Target: 5'- cUCACuUGUAUaAGCUUUAGGAUUUAAg -3' miRNA: 3'- -AGUGuACAUAcUCGGAAUUCUAAAUU- -5' |
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28268 | 5' | -41.7 | NC_005902.1 | + | 110100 | 0.77 | 0.99552 |
Target: 5'- uUCACuUGUAUaAGCUUUAGGAUUUAAa -3' miRNA: 3'- -AGUGuACAUAcUCGGAAUUCUAAAUU- -5' |
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28268 | 5' | -41.7 | NC_005902.1 | + | 95332 | 0.77 | 0.992742 |
Target: 5'- aCACucaauUGUAUaAGCCUUAGGAUUUAAa -3' miRNA: 3'- aGUGu----ACAUAcUCGGAAUUCUAAAUU- -5' |
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28268 | 5' | -41.7 | NC_005902.1 | + | 161881 | 0.77 | 0.992742 |
Target: 5'- -aACAaGUAUGAGCCUU-GGAUUUAAu -3' miRNA: 3'- agUGUaCAUACUCGGAAuUCUAAAUU- -5' |
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28268 | 5' | -41.7 | NC_005902.1 | + | 90579 | 0.78 | 0.991559 |
Target: 5'- cUUACuUGUAUaAGCCUUAGGAUUUAAa -3' miRNA: 3'- -AGUGuACAUAcUCGGAAUUCUAAAUU- -5' |
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28268 | 5' | -41.7 | NC_005902.1 | + | 149721 | 0.83 | 0.909833 |
Target: 5'- cUCACuUGUAUaAGCCUUAGGAUUUAAa -3' miRNA: 3'- -AGUGuACAUAcUCGGAAUUCUAAAUU- -5' |
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28268 | 5' | -41.7 | NC_005902.1 | + | 24192 | 1.08 | 0.084761 |
Target: 5'- cUCACAUGUAUGAGCCUUAAGAUUUAAu -3' miRNA: 3'- -AGUGUACAUACUCGGAAUUCUAAAUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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