miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28270 5' -44.1 NC_005902.1 + 182956 0.66 1
Target:  5'- uGAACAAGUGUAuauauAGC-UUAGGuGUUa- -3'
miRNA:   3'- gUUUGUUCACAU-----UCGgAAUCC-CAAau -5'
28270 5' -44.1 NC_005902.1 + 43867 0.66 1
Target:  5'- aCAAACAAGUGU-AGCaaauaaguauauagCUUAGGuGUUa- -3'
miRNA:   3'- -GUUUGUUCACAuUCG--------------GAAUCC-CAAau -5'
28270 5' -44.1 NC_005902.1 + 88587 0.66 0.999999
Target:  5'- aCAAACAAGUGUAauaAGUaaguauagCUUAGGuGUUa- -3'
miRNA:   3'- -GUUUGUUCACAU---UCG--------GAAUCC-CAAau -5'
28270 5' -44.1 NC_005902.1 + 36185 0.67 0.999998
Target:  5'- aUAAACAAGUGUAgcaagugaguauaAGCUUUAGGu---- -3'
miRNA:   3'- -GUUUGUUCACAU-------------UCGGAAUCCcaaau -5'
28270 5' -44.1 NC_005902.1 + 177404 0.67 0.999997
Target:  5'- gCAAACAAGUaUAAGCCaUaagauuuaaAGGGUUa- -3'
miRNA:   3'- -GUUUGUUCAcAUUCGGaA---------UCCCAAau -5'
28270 5' -44.1 NC_005902.1 + 34667 0.67 0.999995
Target:  5'- gCAAAUGAGUaUAAGCUUUAGGaUUUAa -3'
miRNA:   3'- -GUUUGUUCAcAUUCGGAAUCCcAAAU- -5'
28270 5' -44.1 NC_005902.1 + 153110 0.68 0.999993
Target:  5'- uGAACAAGUaUAAGUUUUAGGuGUUa- -3'
miRNA:   3'- gUUUGUUCAcAUUCGGAAUCC-CAAau -5'
28270 5' -44.1 NC_005902.1 + 31439 0.68 0.999989
Target:  5'- aCAAACAAGUGUAgcaagugaguauauAGCUUagguaaAGGGUUa- -3'
miRNA:   3'- -GUUUGUUCACAU--------------UCGGAa-----UCCCAAau -5'
28270 5' -44.1 NC_005902.1 + 65664 0.69 0.99995
Target:  5'- -uAAUAAGUaUAAGCCUUAGGaUUUAa -3'
miRNA:   3'- guUUGUUCAcAUUCGGAAUCCcAAAU- -5'
28270 5' -44.1 NC_005902.1 + 175728 0.69 0.999932
Target:  5'- gCAAACAAGUaaUGAGCUUUAGGaUUUAa -3'
miRNA:   3'- -GUUUGUUCAc-AUUCGGAAUCCcAAAU- -5'
28270 5' -44.1 NC_005902.1 + 157106 0.69 0.99991
Target:  5'- gCAAAUAAGUaUAAGCUUUAGGaUUUAa -3'
miRNA:   3'- -GUUUGUUCAcAUUCGGAAUCCcAAAU- -5'
28270 5' -44.1 NC_005902.1 + 12680 0.7 0.999893
Target:  5'- aCAuACAAGUGagcauagugacaguaUAAGCCUUAagauuuaacGGGUUUAa -3'
miRNA:   3'- -GUuUGUUCAC---------------AUUCGGAAU---------CCCAAAU- -5'
28270 5' -44.1 NC_005902.1 + 17685 0.7 0.999881
Target:  5'- ---------aUAAGCCUUAGGGUUUAa -3'
miRNA:   3'- guuuguucacAUUCGGAAUCCCAAAU- -5'
28270 5' -44.1 NC_005902.1 + 46481 0.7 0.999881
Target:  5'- ---------aUAAGCCUUAGGGUUUAa -3'
miRNA:   3'- guuuguucacAUUCGGAAUCCCAAAU- -5'
28270 5' -44.1 NC_005902.1 + 78662 0.7 0.999663
Target:  5'- gCAAACAAGUaUAAGCCcUAGGaUUUAa -3'
miRNA:   3'- -GUUUGUUCAcAUUCGGaAUCCcAAAU- -5'
28270 5' -44.1 NC_005902.1 + 163482 0.72 0.998097
Target:  5'- gCAAACAAGUau-AGCCUUAGGaUUUAa -3'
miRNA:   3'- -GUUUGUUCAcauUCGGAAUCCcAAAU- -5'
28270 5' -44.1 NC_005902.1 + 107163 0.73 0.997572
Target:  5'- aUAAACAAGUGUAgcaaaugaguauauAGCUUaAGGGUUa- -3'
miRNA:   3'- -GUUUGUUCACAU--------------UCGGAaUCCCAAau -5'
28270 5' -44.1 NC_005902.1 + 33120 0.73 0.996092
Target:  5'- uGAAUAAGUaUAAGCCUUAGGaUUUAa -3'
miRNA:   3'- gUUUGUUCAcAUUCGGAAUCCcAAAU- -5'
28270 5' -44.1 NC_005902.1 + 170681 0.73 0.996092
Target:  5'- -------aUGUAAGCUUUAGGGUUUAa -3'
miRNA:   3'- guuuguucACAUUCGGAAUCCCAAAU- -5'
28270 5' -44.1 NC_005902.1 + 161878 0.74 0.991436
Target:  5'- gCAAACAAGUaUGAGCCUUGgauuuaauGGGUUa- -3'
miRNA:   3'- -GUUUGUUCAcAUUCGGAAU--------CCCAAau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.