miRNA display CGI


Results 1 - 20 of 44 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28274 3' -40.2 NC_005902.1 + 55125 0.66 1
Target:  5'- -uUUAACCCUUUAAuUCCGcaUUGUc -3'
miRNA:   3'- cuAAUUGGGAAAUUuAGGUacAACAa -5'
28274 3' -40.2 NC_005902.1 + 78883 0.69 1
Target:  5'- -uUUAACCCUUUAAAUCCuagGg---- -3'
miRNA:   3'- cuAAUUGGGAAAUUUAGGua-Caacaa -5'
28274 3' -40.2 NC_005902.1 + 76600 0.7 1
Target:  5'- -uUUAAUCCUUUAAuUCUAUGcUGUUa -3'
miRNA:   3'- cuAAUUGGGAAAUUuAGGUACaACAA- -5'
28274 3' -40.2 NC_005902.1 + 55245 0.7 1
Target:  5'- ----uACCCUUUAAuUCCAUGcUGUc -3'
miRNA:   3'- cuaauUGGGAAAUUuAGGUACaACAa -5'
28274 3' -40.2 NC_005902.1 + 50607 0.7 1
Target:  5'- aAUUAACCCUUUAAAUCCu------- -3'
miRNA:   3'- cUAAUUGGGAAAUUUAGGuacaacaa -5'
28274 3' -40.2 NC_005902.1 + 67301 0.7 1
Target:  5'- cAUUAACUCUUUAA-UCCuaagGUGUUGUUg -3'
miRNA:   3'- cUAAUUGGGAAAUUuAGG----UACAACAA- -5'
28274 3' -40.2 NC_005902.1 + 90800 0.71 1
Target:  5'- uGUUAACCCUUUAAAUCCu------- -3'
miRNA:   3'- cUAAUUGGGAAAUUUAGGuacaacaa -5'
28274 3' -40.2 NC_005902.1 + 15924 0.66 1
Target:  5'- aAUUAAUCCUUUAAuUCC-UGggGUa -3'
miRNA:   3'- cUAAUUGGGAAAUUuAGGuACaaCAa -5'
28274 3' -40.2 NC_005902.1 + 184442 0.7 1
Target:  5'- ---aAACCCUUUAAcUCUuaagGUGUUGUUa -3'
miRNA:   3'- cuaaUUGGGAAAUUuAGG----UACAACAA- -5'
28274 3' -40.2 NC_005902.1 + 52694 0.69 1
Target:  5'- -uUUAACCCUUUAAAUCCuagGg---- -3'
miRNA:   3'- cuAAUUGGGAAAUUUAGGua-Caacaa -5'
28274 3' -40.2 NC_005902.1 + 181211 0.69 1
Target:  5'- -uUUAGCCCUUUAAcUCCuaaagcGUUGUc -3'
miRNA:   3'- cuAAUUGGGAAAUUuAGGua----CAACAa -5'
28274 3' -40.2 NC_005902.1 + 97491 0.69 1
Target:  5'- -uUUAACCCUUUAAuUCUAUaUUGUc -3'
miRNA:   3'- cuAAUUGGGAAAUUuAGGUAcAACAa -5'
28274 3' -40.2 NC_005902.1 + 58576 0.67 1
Target:  5'- ---cAACCCUUUAAcUCCAUGcgucaucaauacuUUGUg -3'
miRNA:   3'- cuaaUUGGGAAAUUuAGGUAC-------------AACAa -5'
28274 3' -40.2 NC_005902.1 + 39407 0.67 1
Target:  5'- aGUUAACCUUUUAAcUCCAUaUUGa- -3'
miRNA:   3'- cUAAUUGGGAAAUUuAGGUAcAACaa -5'
28274 3' -40.2 NC_005902.1 + 17057 0.67 1
Target:  5'- ----uACCUUUUAAcUCUAUGUUGUc -3'
miRNA:   3'- cuaauUGGGAAAUUuAGGUACAACAa -5'
28274 3' -40.2 NC_005902.1 + 44043 0.68 1
Target:  5'- --aUAACCCUUUAAAUCCuaagGcUUGc- -3'
miRNA:   3'- cuaAUUGGGAAAUUUAGGua--C-AACaa -5'
28274 3' -40.2 NC_005902.1 + 81351 0.68 1
Target:  5'- ----uAUCCUUUAAAUCCuaaggGUUGUa -3'
miRNA:   3'- cuaauUGGGAAAUUUAGGua---CAACAa -5'
28274 3' -40.2 NC_005902.1 + 177625 0.68 1
Target:  5'- -cUUAACCCUUUAAAUCUuAUGg---- -3'
miRNA:   3'- cuAAUUGGGAAAUUUAGG-UACaacaa -5'
28274 3' -40.2 NC_005902.1 + 88489 0.68 1
Target:  5'- uGUUAAUCCUUUAAAUCUuaAUGUUu-- -3'
miRNA:   3'- cUAAUUGGGAAAUUUAGG--UACAAcaa -5'
28274 3' -40.2 NC_005902.1 + 162101 0.68 1
Target:  5'- gGGUUAACCCaUUAAAUCCAa------ -3'
miRNA:   3'- -CUAAUUGGGaAAUUUAGGUacaacaa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.