miRNA display CGI


Results 41 - 60 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28274 5' -44.3 NC_005902.1 + 131027 0.7 0.999743
Target:  5'- -uGUUAUCGAUGACGCcUuagaaguuaaAGGGUUAAa -3'
miRNA:   3'- cgUAGUAGUUACUGUGuA----------UCCCAAUU- -5'
28274 5' -44.3 NC_005902.1 + 122665 0.73 0.996801
Target:  5'- gGUAUCAUUAAUGACACAaAGuGUUGu -3'
miRNA:   3'- -CGUAGUAGUUACUGUGUaUCcCAAUu -5'
28274 5' -44.3 NC_005902.1 + 117131 0.74 0.991681
Target:  5'- uGUAUCAUCGAUa--AUAUAGGGUUAGa -3'
miRNA:   3'- -CGUAGUAGUUAcugUGUAUCCCAAUU- -5'
28274 5' -44.3 NC_005902.1 + 116791 0.68 0.99999
Target:  5'- uGCAUCGUUAAUGAUaACAUGGaaUUAAa -3'
miRNA:   3'- -CGUAGUAGUUACUG-UGUAUCccAAUU- -5'
28274 5' -44.3 NC_005902.1 + 114958 0.72 0.998475
Target:  5'- cGUAUUAUCAAUGAUGCcuUGGGaGUUAGg -3'
miRNA:   3'- -CGUAGUAGUUACUGUGu-AUCC-CAAUU- -5'
28274 5' -44.3 NC_005902.1 + 114776 0.68 0.99999
Target:  5'- -uGUCAUCGGUGACgAUGUAGaGUUAAa -3'
miRNA:   3'- cgUAGUAGUUACUG-UGUAUCcCAAUU- -5'
28274 5' -44.3 NC_005902.1 + 111050 0.66 0.999999
Target:  5'- aUAUCAUUAAUGACAUgauuuaaAGGGUa-- -3'
miRNA:   3'- cGUAGUAGUUACUGUGua-----UCCCAauu -5'
28274 5' -44.3 NC_005902.1 + 110405 0.72 0.998286
Target:  5'- uGCAUCAUCAAUGACACuuuauauucugacaAUgccuuaggaauuaaAGGGUa-- -3'
miRNA:   3'- -CGUAGUAGUUACUGUG--------------UA--------------UCCCAauu -5'
28274 5' -44.3 NC_005902.1 + 110202 0.7 0.999795
Target:  5'- aGUGUCAUUGAUGAUAgCAUgaguuaaAGGGUUAAc -3'
miRNA:   3'- -CGUAGUAGUUACUGU-GUA-------UCCCAAUU- -5'
28274 5' -44.3 NC_005902.1 + 104296 0.74 0.993444
Target:  5'- gGCAUCAUUGAUGACGgugugagguggGGGGUUAAa -3'
miRNA:   3'- -CGUAGUAGUUACUGUgua--------UCCCAAUU- -5'
28274 5' -44.3 NC_005902.1 + 104152 0.72 0.998849
Target:  5'- aUAUCAUCAAUGAUGCuuuaagaauuaaaGGGGUUAAa -3'
miRNA:   3'- cGUAGUAGUUACUGUGua-----------UCCCAAUU- -5'
28274 5' -44.3 NC_005902.1 + 102185 0.66 1
Target:  5'- uCAUUAUCAAUGACGauuUAGGaGUa-- -3'
miRNA:   3'- cGUAGUAGUUACUGUgu-AUCC-CAauu -5'
28274 5' -44.3 NC_005902.1 + 100357 0.7 0.999671
Target:  5'- -uGUCAUCAAUGAUGCcUuaagaguaaAGGGUUAAa -3'
miRNA:   3'- cgUAGUAGUUACUGUGuA---------UCCCAAUU- -5'
28274 5' -44.3 NC_005902.1 + 98977 0.8 0.885887
Target:  5'- aGCAUUGUUAGUGAUACAUgaguuaaAGGGUUAAc -3'
miRNA:   3'- -CGUAGUAGUUACUGUGUA-------UCCCAAUU- -5'
28274 5' -44.3 NC_005902.1 + 98735 0.73 0.996801
Target:  5'- aGCAUCAUCAGUGACAaUAUGaaGUUAAc -3'
miRNA:   3'- -CGUAGUAGUUACUGU-GUAUccCAAUU- -5'
28274 5' -44.3 NC_005902.1 + 97254 0.71 0.99962
Target:  5'- gGUAUCAUCAAUGAUGCAucguauuguugacaaUauagaauuaaAGGGUUAAa -3'
miRNA:   3'- -CGUAGUAGUUACUGUGU---------------A----------UCCCAAUU- -5'
28274 5' -44.3 NC_005902.1 + 96109 0.75 0.987384
Target:  5'- uCGUCAUCAAUGACACAaAGuGUUGu -3'
miRNA:   3'- cGUAGUAGUUACUGUGUaUCcCAAUu -5'
28274 5' -44.3 NC_005902.1 + 93503 0.73 0.995212
Target:  5'- uUAUUGUCAAUGACACuuuaggagucagGGGGUUAAa -3'
miRNA:   3'- cGUAGUAGUUACUGUGua----------UCCCAAUU- -5'
28274 5' -44.3 NC_005902.1 + 92319 0.67 0.999997
Target:  5'- gGUAUCAUCAAUGACAUAaAGcaUUAu -3'
miRNA:   3'- -CGUAGUAGUUACUGUGUaUCccAAUu -5'
28274 5' -44.3 NC_005902.1 + 92163 0.72 0.998849
Target:  5'- aCAUCAUCAAUGACACAaagcauugucaauaaUAGuGGg--- -3'
miRNA:   3'- cGUAGUAGUUACUGUGU---------------AUC-CCaauu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.