miRNA display CGI


Results 21 - 40 of 204 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28276 3' -46.5 NC_005902.1 + 163385 0.7 0.996748
Target:  5'- aACCCuUUUAACAUCUAAGCUAUaUAUGa -3'
miRNA:   3'- -UGGG-AGAUUGUGGAUUUGGUAcAUAU- -5'
28276 3' -46.5 NC_005902.1 + 162965 0.74 0.961173
Target:  5'- aAUCCUUUAAUACCUAAGCUAUaUAUGa -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcAUAU- -5'
28276 3' -46.5 NC_005902.1 + 162645 0.74 0.964814
Target:  5'- uACUCUUUAACACCUAAGCUAUa---- -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5'
28276 3' -46.5 NC_005902.1 + 162389 0.74 0.964814
Target:  5'- uCCCUUUAACACCUAAGCUAc----- -3'
miRNA:   3'- uGGGAGAUUGUGGAUUUGGUacauau -5'
28276 3' -46.5 NC_005902.1 + 162274 0.69 0.998099
Target:  5'- aAUCCUUUAACAUCUAAACUAUa---- -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5'
28276 3' -46.5 NC_005902.1 + 158099 0.73 0.981752
Target:  5'- uAUCUUUUAACACCUAAGCUAUauaaaGUGUAg -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUA-----CAUAU- -5'
28276 3' -46.5 NC_005902.1 + 158076 0.67 0.999785
Target:  5'- aACCCUUUAAUACCUAca--GUGUGa- -3'
miRNA:   3'- -UGGGAGAUUGUGGAUuuggUACAUau -5'
28276 3' -46.5 NC_005902.1 + 157040 0.77 0.874567
Target:  5'- aACUCUUUAACACCUAAGCUAUaUAUGa -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcAUAU- -5'
28276 3' -46.5 NC_005902.1 + 156643 0.69 0.998099
Target:  5'- uACCCUUUAACAUUUAAGCUAUa---- -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5'
28276 3' -46.5 NC_005902.1 + 155165 0.71 0.993803
Target:  5'- cACCUUUUAACACCcAAGCUAUGa--- -3'
miRNA:   3'- -UGGGAGAUUGUGGaUUUGGUACauau -5'
28276 3' -46.5 NC_005902.1 + 154836 0.78 0.850153
Target:  5'- uACCCUUUAAUACCUAAGCUAUauacaaacaaGUGUAg -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUA----------CAUAU- -5'
28276 3' -46.5 NC_005902.1 + 150156 0.76 0.928353
Target:  5'- aACCCUUUAACACCUAAGgUGUGg--- -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUgGUACauau -5'
28276 3' -46.5 NC_005902.1 + 149453 0.69 0.998707
Target:  5'- aACCUUUUAACACUUAAGCUAUa---- -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5'
28276 3' -46.5 NC_005902.1 + 148484 0.68 0.999392
Target:  5'- uAUCUUUUAACACCUAAGCUugcuaugcuuauuUGUAUAu -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGu------------ACAUAU- -5'
28276 3' -46.5 NC_005902.1 + 147589 0.76 0.928353
Target:  5'- aAUCCUgUAACACCUAAGCUAUaUAUAa -3'
miRNA:   3'- -UGGGAgAUUGUGGAUUUGGUAcAUAU- -5'
28276 3' -46.5 NC_005902.1 + 146425 0.75 0.944032
Target:  5'- aAUCCUUUAACACCUAAGCUAUa---- -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5'
28276 3' -46.5 NC_005902.1 + 146187 0.78 0.850153
Target:  5'- aACCCUUUAACACUUAAGCUAUaUAUGa -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcAUAU- -5'
28276 3' -46.5 NC_005902.1 + 145944 0.75 0.944032
Target:  5'- aACCCUUUAACAUCUAAGCUAUa---- -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5'
28276 3' -46.5 NC_005902.1 + 144402 0.75 0.944032
Target:  5'- aACCCUUUAACAUCUAAACUAUa---- -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5'
28276 3' -46.5 NC_005902.1 + 143891 0.7 0.997266
Target:  5'- cACCCUUUAACAUCUAAAUUAUa---- -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.