miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28277 5' -51.2 NC_005902.1 + 134490 0.66 0.992878
Target:  5'- -cCAUUGuuaauaAUGCCUUAGGAGUUAAa -3'
miRNA:   3'- uaGUAGCuac---UGCGGAAUCCUCGAUU- -5'
28277 5' -51.2 NC_005902.1 + 113948 0.66 0.992878
Target:  5'- uGUUAaUGAUGcUGCUUUAGGAGUUAAa -3'
miRNA:   3'- -UAGUaGCUACuGCGGAAUCCUCGAUU- -5'
28277 5' -51.2 NC_005902.1 + 137574 0.66 0.992878
Target:  5'- uGUUAUCaAUaAUGCCaUAGGAGCUAAa -3'
miRNA:   3'- -UAGUAGcUAcUGCGGaAUCCUCGAUU- -5'
28277 5' -51.2 NC_005902.1 + 142075 0.66 0.991793
Target:  5'- uGUUAUUGAUGAUGCCUUcGaAGUUAAc -3'
miRNA:   3'- -UAGUAGCUACUGCGGAAuCcUCGAUU- -5'
28277 5' -51.2 NC_005902.1 + 57440 0.66 0.991793
Target:  5'- uUCAgUCGGUGAauuaGCCaUAGGAGUa-- -3'
miRNA:   3'- uAGU-AGCUACUg---CGGaAUCCUCGauu -5'
28277 5' -51.2 NC_005902.1 + 104151 0.66 0.991793
Target:  5'- uAUCAUCaAUGAUGCUUUaagaauuaaAGGGGUUAAa -3'
miRNA:   3'- -UAGUAGcUACUGCGGAA---------UCCUCGAUU- -5'
28277 5' -51.2 NC_005902.1 + 85339 0.66 0.991793
Target:  5'- cAUUAUUGAUGACGCau--GGAGUUu- -3'
miRNA:   3'- -UAGUAGCUACUGCGgaauCCUCGAuu -5'
28277 5' -51.2 NC_005902.1 + 149484 0.66 0.990581
Target:  5'- cAUCAUCGAUGAUGUCUUAaGuGUa-- -3'
miRNA:   3'- -UAGUAGCUACUGCGGAAUcCuCGauu -5'
28277 5' -51.2 NC_005902.1 + 33057 0.66 0.989233
Target:  5'- gAUCAUCGAUGAUaCCUU--GAGUUAAu -3'
miRNA:   3'- -UAGUAGCUACUGcGGAAucCUCGAUU- -5'
28277 5' -51.2 NC_005902.1 + 48400 0.67 0.983699
Target:  5'- cGUCAUCGAUGAUacaaaGCaucauugauaauacUUUAGGAGUUAAa -3'
miRNA:   3'- -UAGUAGCUACUG-----CG--------------GAAUCCUCGAUU- -5'
28277 5' -51.2 NC_005902.1 + 83832 0.67 0.982288
Target:  5'- --uGUUGAUGAUaUCUUAGGAGUUAAa -3'
miRNA:   3'- uagUAGCUACUGcGGAAUCCUCGAUU- -5'
28277 5' -51.2 NC_005902.1 + 37552 0.67 0.981008
Target:  5'- cAUC-UCGAUGACGCCUUguguuauugaugacaAcauGGAGUUAAa -3'
miRNA:   3'- -UAGuAGCUACUGCGGAA---------------U---CCUCGAUU- -5'
28277 5' -51.2 NC_005902.1 + 93506 0.67 0.980117
Target:  5'- cAUCAUUGAUGAUGCUUUAaaAGUUAAa -3'
miRNA:   3'- -UAGUAGCUACUGCGGAAUccUCGAUU- -5'
28277 5' -51.2 NC_005902.1 + 158132 0.67 0.977753
Target:  5'- cAUCAUCGAUGACaCau--GGAGUUAAa -3'
miRNA:   3'- -UAGUAGCUACUGcGgaauCCUCGAUU- -5'
28277 5' -51.2 NC_005902.1 + 143560 0.67 0.977753
Target:  5'- cAUCAUUGucaAUGACaUCUUAGGAGUUAAc -3'
miRNA:   3'- -UAGUAGC---UACUGcGGAAUCCUCGAUU- -5'
28277 5' -51.2 NC_005902.1 + 25285 0.67 0.975188
Target:  5'- uAUCGUCaacaACGCUUUAGGAGUUAAa -3'
miRNA:   3'- -UAGUAGcuacUGCGGAAUCCUCGAUU- -5'
28277 5' -51.2 NC_005902.1 + 100357 0.67 0.975188
Target:  5'- uGUCAUCaAUGAUGCCUUAaGAGUa-- -3'
miRNA:   3'- -UAGUAGcUACUGCGGAAUcCUCGauu -5'
28277 5' -51.2 NC_005902.1 + 91963 0.67 0.975188
Target:  5'- uGUCAUUGAUGAUGUCUUAaaGGUUAAa -3'
miRNA:   3'- -UAGUAGCUACUGCGGAAUccUCGAUU- -5'
28277 5' -51.2 NC_005902.1 + 48254 0.68 0.972414
Target:  5'- ----cUGAcGAUGCCUUAGGAGUUAu -3'
miRNA:   3'- uaguaGCUaCUGCGGAAUCCUCGAUu -5'
28277 5' -51.2 NC_005902.1 + 143742 0.68 0.972414
Target:  5'- uGUCAUUGAUaAUGCCUUgaguuaAGGGGUUAAg -3'
miRNA:   3'- -UAGUAGCUAcUGCGGAA------UCCUCGAUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.