miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28278 3' -40.7 NC_005902.1 + 91299 0.66 1
Target:  5'- cCCUUUAACUCCAcacaucaucaauaaUGCCuuaGgaGUUAAg- -3'
miRNA:   3'- -GGAAAUUGAGGU--------------AUGG---CaaCAAUUac -5'
28278 3' -40.7 NC_005902.1 + 34907 0.66 1
Target:  5'- uCUUUUAACUCCAUAUUGUc------- -3'
miRNA:   3'- -GGAAAUUGAGGUAUGGCAacaauuac -5'
28278 3' -40.7 NC_005902.1 + 93488 0.66 1
Target:  5'- aCCUUUAACUCUAcAUUaUUGUcAAUGa -3'
miRNA:   3'- -GGAAAUUGAGGUaUGGcAACAaUUAC- -5'
28278 3' -40.7 NC_005902.1 + 105999 0.66 1
Target:  5'- cUCUUUAACUCCuaa--GUUGUUcucAAUGa -3'
miRNA:   3'- -GGAAAUUGAGGuauggCAACAA---UUAC- -5'
28278 3' -40.7 NC_005902.1 + 85122 0.66 1
Target:  5'- cCCUUauuaAACUCCAUgcgucaucaauaauGCUcuguGUUGUUGAUGa -3'
miRNA:   3'- -GGAAa---UUGAGGUA--------------UGG----CAACAAUUAC- -5'
28278 3' -40.7 NC_005902.1 + 25120 0.66 1
Target:  5'- cCCUUUAACUCUAUGCUa--------- -3'
miRNA:   3'- -GGAAAUUGAGGUAUGGcaacaauuac -5'
28278 3' -40.7 NC_005902.1 + 114991 0.66 1
Target:  5'- cCCUUUAACUCUAcAUCGUcaccGAUGa -3'
miRNA:   3'- -GGAAAUUGAGGUaUGGCAacaaUUAC- -5'
28278 3' -40.7 NC_005902.1 + 136424 0.66 1
Target:  5'- --aUUAACUCUAUGCUGUuauaacacuuuauguUGUUAAc- -3'
miRNA:   3'- ggaAAUUGAGGUAUGGCA---------------ACAAUUac -5'
28278 3' -40.7 NC_005902.1 + 125952 0.66 1
Target:  5'- cUCUUUAACUUCuaagGCa-UUGUUGAUGa -3'
miRNA:   3'- -GGAAAUUGAGGua--UGgcAACAAUUAC- -5'
28278 3' -40.7 NC_005902.1 + 157918 0.67 1
Target:  5'- cCCUUUAACUCCAUgugucaucgaugauGCUuugUGUcauUGAUGa -3'
miRNA:   3'- -GGAAAUUGAGGUA--------------UGGca-ACA---AUUAC- -5'
28278 3' -40.7 NC_005902.1 + 50529 0.67 1
Target:  5'- cCCUUUAACUCUuccaugcacagcaAUACUGauguaUUGUUGGUa -3'
miRNA:   3'- -GGAAAUUGAGG-------------UAUGGC-----AACAAUUAc -5'
28278 3' -40.7 NC_005902.1 + 175022 0.67 1
Target:  5'- cCCUUUAACUCaugcaucaucaauaAUGCaaaGaUUGUUGAUGa -3'
miRNA:   3'- -GGAAAUUGAGg-------------UAUGg--C-AACAAUUAC- -5'
28278 3' -40.7 NC_005902.1 + 69406 0.67 1
Target:  5'- cCCUUUAACUUCAUAUCa---UUAAUGc -3'
miRNA:   3'- -GGAAAUUGAGGUAUGGcaacAAUUAC- -5'
28278 3' -40.7 NC_005902.1 + 33490 0.67 1
Target:  5'- uCCUUUAACUCUAUAUUGUc------- -3'
miRNA:   3'- -GGAAAUUGAGGUAUGGCAacaauuac -5'
28278 3' -40.7 NC_005902.1 + 39158 0.67 1
Target:  5'- cCCcUUAACUCCuaaAaaGUUGUUGAUa -3'
miRNA:   3'- -GGaAAUUGAGGua-UggCAACAAUUAc -5'
28278 3' -40.7 NC_005902.1 + 66954 0.68 1
Target:  5'- aCCaUUUAGCUCUAcacAUCGUUGaUGAUGu -3'
miRNA:   3'- -GG-AAAUUGAGGUa--UGGCAACaAUUAC- -5'
28278 3' -40.7 NC_005902.1 + 100455 0.68 1
Target:  5'- uCCUUUAACUCCAcauuguaauaaUGCUuuGggGUUAAa- -3'
miRNA:   3'- -GGAAAUUGAGGU-----------AUGG--CaaCAAUUac -5'
28278 3' -40.7 NC_005902.1 + 136119 0.68 1
Target:  5'- uCCUUUAACUCCAcACUaucaUUAAUGa -3'
miRNA:   3'- -GGAAAUUGAGGUaUGGcaacAAUUAC- -5'
28278 3' -40.7 NC_005902.1 + 33156 0.68 1
Target:  5'- aCCUUUAACUCUAUAUUGUc------- -3'
miRNA:   3'- -GGAAAUUGAGGUAUGGCAacaauuac -5'
28278 3' -40.7 NC_005902.1 + 143547 0.68 1
Target:  5'- cCUUUUAACUCCAcAUCaUUGUcAAUGa -3'
miRNA:   3'- -GGAAAUUGAGGUaUGGcAACAaUUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.