miRNA display CGI


Results 1 - 20 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28281 3' -43.3 NC_005902.1 + 11368 0.66 1
Target:  5'- -gUUAAC-CCUAug-UGUCAUUGAUGa -3'
miRNA:   3'- ggAAUUGaGGAUuguGCAGUAACUAC- -5'
28281 3' -43.3 NC_005902.1 + 75753 0.67 1
Target:  5'- cUCUUAACUCCUAaaGCACcaUCAaUGAc- -3'
miRNA:   3'- -GGAAUUGAGGAU--UGUGc-AGUaACUac -5'
28281 3' -43.3 NC_005902.1 + 81997 0.68 1
Target:  5'- cCUUUAAaUCCUAAgGUGUUAUUGGUGa -3'
miRNA:   3'- -GGAAUUgAGGAUUgUGCAGUAACUAC- -5'
28281 3' -43.3 NC_005902.1 + 162331 0.68 1
Target:  5'- uUUUAAUUUUaAACACGUCAUuaaUGAUGu -3'
miRNA:   3'- gGAAUUGAGGaUUGUGCAGUA---ACUAC- -5'
28281 3' -43.3 NC_005902.1 + 97110 0.68 1
Target:  5'- uUUUAACUCUgAACAUGUUGUcaaUGAUGu -3'
miRNA:   3'- gGAAUUGAGGaUUGUGCAGUA---ACUAC- -5'
28281 3' -43.3 NC_005902.1 + 54680 0.67 1
Target:  5'- --aUAACUCCUAAUACagGUgAUUGGUu -3'
miRNA:   3'- ggaAUUGAGGAUUGUG--CAgUAACUAc -5'
28281 3' -43.3 NC_005902.1 + 114742 0.67 1
Target:  5'- cCCcUAACUCCcAAgGCaUCAUUGAUa -3'
miRNA:   3'- -GGaAUUGAGGaUUgUGcAGUAACUAc -5'
28281 3' -43.3 NC_005902.1 + 37320 0.68 1
Target:  5'- cCUUUAACUCCauguugucaucaaUAACacaagGCGUCAUcGAUGa -3'
miRNA:   3'- -GGAAUUGAGG-------------AUUG-----UGCAGUAaCUAC- -5'
28281 3' -43.3 NC_005902.1 + 3130 0.68 1
Target:  5'- -aUUAACUCCguAUACGUCAcUGAc- -3'
miRNA:   3'- ggAAUUGAGGauUGUGCAGUaACUac -5'
28281 3' -43.3 NC_005902.1 + 136731 0.66 1
Target:  5'- uCUUUAACUCCaugu-UGUCAUUGAc- -3'
miRNA:   3'- -GGAAUUGAGGauuguGCAGUAACUac -5'
28281 3' -43.3 NC_005902.1 + 180753 0.67 1
Target:  5'- cCCUUAAUUCCUAagguguuaucaacaAUGCuucauaUCAUUGAUGa -3'
miRNA:   3'- -GGAAUUGAGGAU--------------UGUGc-----AGUAACUAC- -5'
28281 3' -43.3 NC_005902.1 + 17056 0.68 1
Target:  5'- aCCUuuUAACUCUaugu-UGUCAUUGAUGa -3'
miRNA:   3'- -GGA--AUUGAGGauuguGCAGUAACUAC- -5'
28281 3' -43.3 NC_005902.1 + 123082 0.66 1
Target:  5'- cCUUUAAUUCCUAaggcaucaucaACaaugcaaaACGUCAUUGAa- -3'
miRNA:   3'- -GGAAUUGAGGAU-----------UG--------UGCAGUAACUac -5'
28281 3' -43.3 NC_005902.1 + 134346 0.66 1
Target:  5'- --cUAAUUCCUAAgAUGUCAUcaacGAUGc -3'
miRNA:   3'- ggaAUUGAGGAUUgUGCAGUAa---CUAC- -5'
28281 3' -43.3 NC_005902.1 + 93540 0.66 1
Target:  5'- cCCUUAACUUCacaucguuguuaaUGACAUaaagcaUCAUUGAUGa -3'
miRNA:   3'- -GGAAUUGAGG-------------AUUGUGc-----AGUAACUAC- -5'
28281 3' -43.3 NC_005902.1 + 114990 0.66 1
Target:  5'- cCUUUAACUCU--ACAuCGUCAccGAUGa -3'
miRNA:   3'- -GGAAUUGAGGauUGU-GCAGUaaCUAC- -5'
28281 3' -43.3 NC_005902.1 + 150153 0.66 1
Target:  5'- cCUUUAACaCCUAAgGUGUgGUUGAUGa -3'
miRNA:   3'- -GGAAUUGaGGAUUgUGCAgUAACUAC- -5'
28281 3' -43.3 NC_005902.1 + 82108 0.67 1
Target:  5'- aCCUuuUAACUCCaugu-UGUUAUUGAUGa -3'
miRNA:   3'- -GGA--AUUGAGGauuguGCAGUAACUAC- -5'
28281 3' -43.3 NC_005902.1 + 140066 0.67 1
Target:  5'- -gUUAACcCCUAACucaugGCGUCAUcaaUGAUGc -3'
miRNA:   3'- ggAAUUGaGGAUUG-----UGCAGUA---ACUAC- -5'
28281 3' -43.3 NC_005902.1 + 99188 0.68 1
Target:  5'- cCCUUAACUUCUAagGCAuUGUUAaUGAUa -3'
miRNA:   3'- -GGAAUUGAGGAU--UGU-GCAGUaACUAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.