Results 1 - 20 of 112 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28281 | 3' | -43.3 | NC_005902.1 | + | 75753 | 0.67 | 1 |
Target: 5'- cUCUUAACUCCUAaaGCACcaUCAaUGAc- -3' miRNA: 3'- -GGAAUUGAGGAU--UGUGc-AGUaACUac -5' |
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28281 | 3' | -43.3 | NC_005902.1 | + | 81997 | 0.68 | 1 |
Target: 5'- cCUUUAAaUCCUAAgGUGUUAUUGGUGa -3' miRNA: 3'- -GGAAUUgAGGAUUgUGCAGUAACUAC- -5' |
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28281 | 3' | -43.3 | NC_005902.1 | + | 54680 | 0.67 | 1 |
Target: 5'- --aUAACUCCUAAUACagGUgAUUGGUu -3' miRNA: 3'- ggaAUUGAGGAUUGUG--CAgUAACUAc -5' |
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28281 | 3' | -43.3 | NC_005902.1 | + | 3130 | 0.68 | 1 |
Target: 5'- -aUUAACUCCguAUACGUCAcUGAc- -3' miRNA: 3'- ggAAUUGAGGauUGUGCAGUaACUac -5' |
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28281 | 3' | -43.3 | NC_005902.1 | + | 174933 | 0.68 | 1 |
Target: 5'- -aUUAACUCCUAAaAUaUCAUUGAUa -3' miRNA: 3'- ggAAUUGAGGAUUgUGcAGUAACUAc -5' |
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28281 | 3' | -43.3 | NC_005902.1 | + | 97110 | 0.68 | 1 |
Target: 5'- uUUUAACUCUgAACAUGUUGUcaaUGAUGu -3' miRNA: 3'- gGAAUUGAGGaUUGUGCAGUA---ACUAC- -5' |
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28281 | 3' | -43.3 | NC_005902.1 | + | 114742 | 0.67 | 1 |
Target: 5'- cCCcUAACUCCcAAgGCaUCAUUGAUa -3' miRNA: 3'- -GGaAUUGAGGaUUgUGcAGUAACUAc -5' |
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28281 | 3' | -43.3 | NC_005902.1 | + | 37320 | 0.68 | 1 |
Target: 5'- cCUUUAACUCCauguugucaucaaUAACacaagGCGUCAUcGAUGa -3' miRNA: 3'- -GGAAUUGAGG-------------AUUG-----UGCAGUAaCUAC- -5' |
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28281 | 3' | -43.3 | NC_005902.1 | + | 162331 | 0.68 | 1 |
Target: 5'- uUUUAAUUUUaAACACGUCAUuaaUGAUGu -3' miRNA: 3'- gGAAUUGAGGaUUGUGCAGUA---ACUAC- -5' |
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28281 | 3' | -43.3 | NC_005902.1 | + | 180753 | 0.67 | 1 |
Target: 5'- cCCUUAAUUCCUAagguguuaucaacaAUGCuucauaUCAUUGAUGa -3' miRNA: 3'- -GGAAUUGAGGAU--------------UGUGc-----AGUAACUAC- -5' |
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28281 | 3' | -43.3 | NC_005902.1 | + | 136731 | 0.66 | 1 |
Target: 5'- uCUUUAACUCCaugu-UGUCAUUGAc- -3' miRNA: 3'- -GGAAUUGAGGauuguGCAGUAACUac -5' |
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28281 | 3' | -43.3 | NC_005902.1 | + | 11368 | 0.66 | 1 |
Target: 5'- -gUUAAC-CCUAug-UGUCAUUGAUGa -3' miRNA: 3'- ggAAUUGaGGAUuguGCAGUAACUAC- -5' |
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28281 | 3' | -43.3 | NC_005902.1 | + | 17056 | 0.68 | 1 |
Target: 5'- aCCUuuUAACUCUaugu-UGUCAUUGAUGa -3' miRNA: 3'- -GGA--AUUGAGGauuguGCAGUAACUAC- -5' |
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28281 | 3' | -43.3 | NC_005902.1 | + | 99188 | 0.68 | 1 |
Target: 5'- cCCUUAACUUCUAagGCAuUGUUAaUGAUa -3' miRNA: 3'- -GGAAUUGAGGAU--UGU-GCAGUaACUAc -5' |
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28281 | 3' | -43.3 | NC_005902.1 | + | 140066 | 0.67 | 1 |
Target: 5'- -gUUAACcCCUAACucaugGCGUCAUcaaUGAUGc -3' miRNA: 3'- ggAAUUGaGGAUUG-----UGCAGUA---ACUAC- -5' |
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28281 | 3' | -43.3 | NC_005902.1 | + | 82108 | 0.67 | 1 |
Target: 5'- aCCUuuUAACUCCaugu-UGUUAUUGAUGa -3' miRNA: 3'- -GGA--AUUGAGGauuguGCAGUAACUAC- -5' |
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28281 | 3' | -43.3 | NC_005902.1 | + | 150153 | 0.66 | 1 |
Target: 5'- cCUUUAACaCCUAAgGUGUgGUUGAUGa -3' miRNA: 3'- -GGAAUUGaGGAUUgUGCAgUAACUAC- -5' |
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28281 | 3' | -43.3 | NC_005902.1 | + | 114990 | 0.66 | 1 |
Target: 5'- cCUUUAACUCU--ACAuCGUCAccGAUGa -3' miRNA: 3'- -GGAAUUGAGGauUGU-GCAGUaaCUAC- -5' |
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28281 | 3' | -43.3 | NC_005902.1 | + | 93540 | 0.66 | 1 |
Target: 5'- cCCUUAACUUCacaucguuguuaaUGACAUaaagcaUCAUUGAUGa -3' miRNA: 3'- -GGAAUUGAGG-------------AUUGUGc-----AGUAACUAC- -5' |
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28281 | 3' | -43.3 | NC_005902.1 | + | 134346 | 0.66 | 1 |
Target: 5'- --cUAAUUCCUAAgAUGUCAUcaacGAUGc -3' miRNA: 3'- ggaAUUGAGGAUUgUGCAGUAa---CUAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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