miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28281 5' -42.4 NC_005902.1 + 161990 0.66 1
Target:  5'- uAUCAUCAAUGACaccuuaGGUGUuaaaGGAUUAAAa -3'
miRNA:   3'- -UAGUAGUUACUG------CUACAc---CUUAAUUU- -5'
28281 5' -42.4 NC_005902.1 + 26222 0.67 1
Target:  5'- -gCAUCAuUGACGAUGguguaGAGUUAAu -3'
miRNA:   3'- uaGUAGUuACUGCUACac---CUUAAUUu -5'
28281 5' -42.4 NC_005902.1 + 149173 0.67 1
Target:  5'- cAUCAUCGAUGACauuuuaGGAGUUAAu -3'
miRNA:   3'- -UAGUAGUUACUGcuaca-CCUUAAUUu -5'
28281 5' -42.4 NC_005902.1 + 58191 0.67 1
Target:  5'- cAUCAUCAAUGAUGc-GUaGAGUUAAAg -3'
miRNA:   3'- -UAGUAGUUACUGCuaCAcCUUAAUUU- -5'
28281 5' -42.4 NC_005902.1 + 167339 0.66 1
Target:  5'- uAUUAUCAAUGAUGcuuuaGGAAUUAAAg -3'
miRNA:   3'- -UAGUAGUUACUGCuaca-CCUUAAUUU- -5'
28281 5' -42.4 NC_005902.1 + 55028 0.66 1
Target:  5'- uAUCGUUGAUGACagcaUGGAAUUAAAg -3'
miRNA:   3'- -UAGUAGUUACUGcuacACCUUAAUUU- -5'
28281 5' -42.4 NC_005902.1 + 71439 0.66 1
Target:  5'- cUCAUUggUGACaGUGUaGAGUUAAGg -3'
miRNA:   3'- uAGUAGuuACUGcUACAcCUUAAUUU- -5'
28281 5' -42.4 NC_005902.1 + 45044 0.68 1
Target:  5'- uGUCAUUGAUaAUG-UGUGGAGUUAAAg -3'
miRNA:   3'- -UAGUAGUUAcUGCuACACCUUAAUUU- -5'
28281 5' -42.4 NC_005902.1 + 157933 0.68 1
Target:  5'- uGUCAUCGAUGAUGcuuUGUGucAUUGAu -3'
miRNA:   3'- -UAGUAGUUACUGCu--ACACcuUAAUUu -5'
28281 5' -42.4 NC_005902.1 + 48201 0.66 1
Target:  5'- uAUCAUCGAUGACGccuuaGGAGcUAAAg -3'
miRNA:   3'- -UAGUAGUUACUGCuaca-CCUUaAUUU- -5'
28281 5' -42.4 NC_005902.1 + 106289 0.68 1
Target:  5'- cAUCGUUGAUGACaGUGUGaAGUUAAAg -3'
miRNA:   3'- -UAGUAGUUACUGcUACACcUUAAUUU- -5'
28281 5' -42.4 NC_005902.1 + 3343 0.68 1
Target:  5'- cAUUGUCAGUGACGuauacGGAGUUAAu -3'
miRNA:   3'- -UAGUAGUUACUGCuaca-CCUUAAUUu -5'
28281 5' -42.4 NC_005902.1 + 26538 0.66 1
Target:  5'- -gCGUCAuUGAUGAUGccuuaGGAGUUAAu -3'
miRNA:   3'- uaGUAGUuACUGCUACa----CCUUAAUUu -5'
28281 5' -42.4 NC_005902.1 + 76639 0.66 1
Target:  5'- cAUCAUCAAcaACacUGUGGAAUUAAAg -3'
miRNA:   3'- -UAGUAGUUacUGcuACACCUUAAUUU- -5'
28281 5' -42.4 NC_005902.1 + 143922 0.66 1
Target:  5'- cAUCAUCAAUGAC--UGUGaAGUUGGGg -3'
miRNA:   3'- -UAGUAGUUACUGcuACACcUUAAUUU- -5'
28281 5' -42.4 NC_005902.1 + 50218 0.67 1
Target:  5'- uAUCAUCAAUGACacaaagcauuauuGAUGaugccuuaGGAGUUAAAg -3'
miRNA:   3'- -UAGUAGUUACUG-------------CUACa-------CCUUAAUUU- -5'
28281 5' -42.4 NC_005902.1 + 136945 0.67 1
Target:  5'- cAUUGUCAAUGACaacaUGGAGUUAAAg -3'
miRNA:   3'- -UAGUAGUUACUGcuacACCUUAAUUU- -5'
28281 5' -42.4 NC_005902.1 + 58815 0.67 1
Target:  5'- cAUCAUCAAUGAUGc-GUaGAGUUAAAg -3'
miRNA:   3'- -UAGUAGUUACUGCuaCAcCUUAAUUU- -5'
28281 5' -42.4 NC_005902.1 + 50384 0.67 1
Target:  5'- uAUCAUCAAUGAU-AUGUGaAGUUAAc -3'
miRNA:   3'- -UAGUAGUUACUGcUACACcUUAAUUu -5'
28281 5' -42.4 NC_005902.1 + 140047 0.68 1
Target:  5'- cGUCAUCAAUGAUGcaagGcgucauugacaacaUGGAGUUAAAa -3'
miRNA:   3'- -UAGUAGUUACUGCua--C--------------ACCUUAAUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.