Results 41 - 60 of 88 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28285 | 5' | -41.3 | NC_005902.1 | + | 90585 | 0.87 | 0.813716 |
Target: 5'- -uGUAUAAgCCUUAGGAUUUAAAGGGu -3' miRNA: 3'- cuUAUGUUgGGAAUCCUAAAUUUCCU- -5' |
|||||||
28285 | 5' | -41.3 | NC_005902.1 | + | 88990 | 0.67 | 1 |
Target: 5'- aAGUAUAugCUUUAGGAgUUAAAGa- -3' miRNA: 3'- cUUAUGUugGGAAUCCUaAAUUUCcu -5' |
|||||||
28285 | 5' | -41.3 | NC_005902.1 | + | 87215 | 0.67 | 1 |
Target: 5'- ---aAUGAUaCCUUAGGGaUUAAAGGAu -3' miRNA: 3'- cuuaUGUUG-GGAAUCCUaAAUUUCCU- -5' |
|||||||
28285 | 5' | -41.3 | NC_005902.1 | + | 82205 | 0.86 | 0.850557 |
Target: 5'- ---aAUAACaCCUUAGGAUUUAAAGGAu -3' miRNA: 3'- cuuaUGUUG-GGAAUCCUAAAUUUCCU- -5' |
|||||||
28285 | 5' | -41.3 | NC_005902.1 | + | 82154 | 0.77 | 0.997819 |
Target: 5'- aGGUAUAAaCUUUAGGAUUUAAAGGGu -3' miRNA: 3'- cUUAUGUUgGGAAUCCUAAAUUUCCU- -5' |
|||||||
28285 | 5' | -41.3 | NC_005902.1 | + | 81307 | 0.68 | 1 |
Target: 5'- -uGUAUAAUCgccAGGGUUUAAAGGAu -3' miRNA: 3'- cuUAUGUUGGgaaUCCUAAAUUUCCU- -5' |
|||||||
28285 | 5' | -41.3 | NC_005902.1 | + | 81137 | 1.12 | 0.07002 |
Target: 5'- aGAAUACAACCCUUAGGAUUUAAAGGAu -3' miRNA: 3'- -CUUAUGUUGGGAAUCCUAAAUUUCCU- -5' |
|||||||
28285 | 5' | -41.3 | NC_005902.1 | + | 78939 | 0.69 | 1 |
Target: 5'- ----uCAACgCUUUAGGAgUUAAGGGAu -3' miRNA: 3'- cuuauGUUG-GGAAUCCUaAAUUUCCU- -5' |
|||||||
28285 | 5' | -41.3 | NC_005902.1 | + | 78668 | 0.79 | 0.990382 |
Target: 5'- aAGUAUaAGCCC-UAGGAUUUAAAGGGu -3' miRNA: 3'- cUUAUG-UUGGGaAUCCUAAAUUUCCU- -5' |
|||||||
28285 | 5' | -41.3 | NC_005902.1 | + | 76145 | 0.68 | 1 |
Target: 5'- -uGUAUAAgCUUUAGGAUUUaAAAGGu -3' miRNA: 3'- cuUAUGUUgGGAAUCCUAAA-UUUCCu -5' |
|||||||
28285 | 5' | -41.3 | NC_005902.1 | + | 75812 | 0.69 | 1 |
Target: 5'- ---aACAACCCcaaauuguggUUGGGAUgauaaUGGAGGAa -3' miRNA: 3'- cuuaUGUUGGG----------AAUCCUAa----AUUUCCU- -5' |
|||||||
28285 | 5' | -41.3 | NC_005902.1 | + | 74871 | 0.67 | 1 |
Target: 5'- ---aACAACgCaUUAGGAgUUAAAGGGu -3' miRNA: 3'- cuuaUGUUGgG-AAUCCUaAAUUUCCU- -5' |
|||||||
28285 | 5' | -41.3 | NC_005902.1 | + | 72027 | 0.66 | 1 |
Target: 5'- aGAAUugAACCUUUcAGGuUUUAAAGa- -3' miRNA: 3'- -CUUAugUUGGGAA-UCCuAAAUUUCcu -5' |
|||||||
28285 | 5' | -41.3 | NC_005902.1 | + | 71392 | 0.69 | 1 |
Target: 5'- cAGUACca-CCUUAGGAUUUaAAAGGu -3' miRNA: 3'- cUUAUGuugGGAAUCCUAAA-UUUCCu -5' |
|||||||
28285 | 5' | -41.3 | NC_005902.1 | + | 69330 | 0.69 | 1 |
Target: 5'- uGAAUAUAugCCUUAGGAaUUAAcccuuuaacaccuAGGu -3' miRNA: 3'- -CUUAUGUugGGAAUCCUaAAUU-------------UCCu -5' |
|||||||
28285 | 5' | -41.3 | NC_005902.1 | + | 69266 | 0.7 | 1 |
Target: 5'- -uAUAUAAgCCUUAGaAUUUAAAGGGu -3' miRNA: 3'- cuUAUGUUgGGAAUCcUAAAUUUCCU- -5' |
|||||||
28285 | 5' | -41.3 | NC_005902.1 | + | 69207 | 0.73 | 0.999977 |
Target: 5'- aGGUAUAAgCCUUAGGAUUUAAAa-- -3' miRNA: 3'- cUUAUGUUgGGAAUCCUAAAUUUccu -5' |
|||||||
28285 | 5' | -41.3 | NC_005902.1 | + | 68203 | 0.68 | 1 |
Target: 5'- ----uUAACCCUguauugaugauacuuUAGGAaUUAAAGGAu -3' miRNA: 3'- cuuauGUUGGGA---------------AUCCUaAAUUUCCU- -5' |
|||||||
28285 | 5' | -41.3 | NC_005902.1 | + | 67402 | 0.77 | 0.996854 |
Target: 5'- -uAUugAugCCUUAGGAgUUAAAGGGu -3' miRNA: 3'- cuUAugUugGGAAUCCUaAAUUUCCU- -5' |
|||||||
28285 | 5' | -41.3 | NC_005902.1 | + | 67087 | 0.68 | 1 |
Target: 5'- ---aACAACaCCUUAGGA-UUAAAGa- -3' miRNA: 3'- cuuaUGUUG-GGAAUCCUaAAUUUCcu -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home