miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28290 3' -33.5 NC_005902.1 + 51674 0.69 1
Target:  5'- ---cCUUUUAACAcUUAAGCU-AUAUa -3'
miRNA:   3'- auuaGAAAAUUGUaAAUUCGAaUAUA- -5'
28290 3' -33.5 NC_005902.1 + 103990 0.66 1
Target:  5'- -----aUUUAAUAUUUAAGCUaUAUAUu -3'
miRNA:   3'- auuagaAAAUUGUAAAUUCGA-AUAUA- -5'
28290 3' -33.5 NC_005902.1 + 72394 0.73 1
Target:  5'- -uAUCuUUUUAAUAUUUAAGCUaAUAUa -3'
miRNA:   3'- auUAG-AAAAUUGUAAAUUCGAaUAUA- -5'
28290 3' -33.5 NC_005902.1 + 28152 0.72 1
Target:  5'- -uAUCUUUUAACAccUAAGCUaUAUAa -3'
miRNA:   3'- auUAGAAAAUUGUaaAUUCGA-AUAUa -5'
28290 3' -33.5 NC_005902.1 + 81049 0.72 1
Target:  5'- aAAUUUUUUAACAUcUAAGCUa---- -3'
miRNA:   3'- aUUAGAAAAUUGUAaAUUCGAauaua -5'
28290 3' -33.5 NC_005902.1 + 135892 0.71 1
Target:  5'- --cUC-UUUAACAUUUAAGC-UAUGUa -3'
miRNA:   3'- auuAGaAAAUUGUAAAUUCGaAUAUA- -5'
28290 3' -33.5 NC_005902.1 + 162750 0.71 1
Target:  5'- -uAUCccUUUAACAUUUAAGCU-AUAUg -3'
miRNA:   3'- auUAGa-AAAUUGUAAAUUCGAaUAUA- -5'
28290 3' -33.5 NC_005902.1 + 15150 0.7 1
Target:  5'- ---cCUUUUAACAUgUAAGCU-AUAUa -3'
miRNA:   3'- auuaGAAAAUUGUAaAUUCGAaUAUA- -5'
28290 3' -33.5 NC_005902.1 + 29612 0.7 1
Target:  5'- -----cUUUAACAUUUAAGCU-AUAUa -3'
miRNA:   3'- auuagaAAAUUGUAAAUUCGAaUAUA- -5'
28290 3' -33.5 NC_005902.1 + 134581 0.7 1
Target:  5'- -----cUUUAACAUUUAAGCU-AUAUa -3'
miRNA:   3'- auuagaAAAUUGUAAAUUCGAaUAUA- -5'
28290 3' -33.5 NC_005902.1 + 153032 0.7 1
Target:  5'- ---aCUUUUaAACAUUUAAGC-UAUGUa -3'
miRNA:   3'- auuaGAAAA-UUGUAAAUUCGaAUAUA- -5'
28290 3' -33.5 NC_005902.1 + 29201 0.66 1
Target:  5'- uUAAUCUUUUAACucuUUaacaccUAAGCUaUAUAUg -3'
miRNA:   3'- -AUUAGAAAAUUGu--AA------AUUCGA-AUAUA- -5'
28290 3' -33.5 NC_005902.1 + 118294 0.69 1
Target:  5'- ---cCUUUUAACAcUUAAGCU-AUAUa -3'
miRNA:   3'- auuaGAAAAUUGUaAAUUCGAaUAUA- -5'
28290 3' -33.5 NC_005902.1 + 118649 0.69 1
Target:  5'- ---cCUUUUAACAcUUAAGCU-AUAUa -3'
miRNA:   3'- auuaGAAAAUUGUaAAUUCGAaUAUA- -5'
28290 3' -33.5 NC_005902.1 + 118517 0.69 1
Target:  5'- aGAUUUUUUAAUcUUUGAGCU-AUAUa -3'
miRNA:   3'- aUUAGAAAAUUGuAAAUUCGAaUAUA- -5'
28290 3' -33.5 NC_005902.1 + 73647 0.68 1
Target:  5'- --cUC-UUUAAUAUUUAaAGCUUAUAUa -3'
miRNA:   3'- auuAGaAAAUUGUAAAU-UCGAAUAUA- -5'
28290 3' -33.5 NC_005902.1 + 16888 0.68 1
Target:  5'- ---aCUUUUAACAUcUAAGCUa---- -3'
miRNA:   3'- auuaGAAAAUUGUAaAUUCGAauaua -5'
28290 3' -33.5 NC_005902.1 + 140686 0.68 1
Target:  5'- --cUCUUUUAACAUccAAGCU-AUAa -3'
miRNA:   3'- auuAGAAAAUUGUAaaUUCGAaUAUa -5'
28290 3' -33.5 NC_005902.1 + 77101 0.68 1
Target:  5'- -------cUAACAcUUAAGCUUAUAUa -3'
miRNA:   3'- auuagaaaAUUGUaAAUUCGAAUAUA- -5'
28290 3' -33.5 NC_005902.1 + 36800 0.67 1
Target:  5'- ---cCUUUUAACAcUUAAGCUa---- -3'
miRNA:   3'- auuaGAAAAUUGUaAAUUCGAauaua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.