miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28290 3' -33.5 NC_005902.1 + 4196 0.75 1
Target:  5'- ---cCUUUUAAUAUUUAAGCUaUAUAa -3'
miRNA:   3'- auuaGAAAAUUGUAAAUUCGA-AUAUa -5'
28290 3' -33.5 NC_005902.1 + 8169 0.71 1
Target:  5'- uUAAUCc--UAACAUUUAAGCU-AUAUa -3'
miRNA:   3'- -AUUAGaaaAUUGUAAAUUCGAaUAUA- -5'
28290 3' -33.5 NC_005902.1 + 12737 0.71 1
Target:  5'- --cUCUUUUAACcccauAGCUUAUAUa -3'
miRNA:   3'- auuAGAAAAUUGuaaauUCGAAUAUA- -5'
28290 3' -33.5 NC_005902.1 + 14820 0.66 1
Target:  5'- ------aUUAACAUUUAAGCUg---- -3'
miRNA:   3'- auuagaaAAUUGUAAAUUCGAauaua -5'
28290 3' -33.5 NC_005902.1 + 15150 0.7 1
Target:  5'- ---cCUUUUAACAUgUAAGCU-AUAUa -3'
miRNA:   3'- auuaGAAAAUUGUAaAUUCGAaUAUA- -5'
28290 3' -33.5 NC_005902.1 + 16888 0.68 1
Target:  5'- ---aCUUUUAACAUcUAAGCUa---- -3'
miRNA:   3'- auuaGAAAAUUGUAaAUUCGAauaua -5'
28290 3' -33.5 NC_005902.1 + 21310 0.7 1
Target:  5'- ---cCUUUUAACAUcUAAGCU-AUAUa -3'
miRNA:   3'- auuaGAAAAUUGUAaAUUCGAaUAUA- -5'
28290 3' -33.5 NC_005902.1 + 23833 0.73 1
Target:  5'- -----aUUUAACAUUUAAGCUaUAUAUa -3'
miRNA:   3'- auuagaAAAUUGUAAAUUCGA-AUAUA- -5'
28290 3' -33.5 NC_005902.1 + 28152 0.72 1
Target:  5'- -uAUCUUUUAACAccUAAGCUaUAUAa -3'
miRNA:   3'- auUAGAAAAUUGUaaAUUCGA-AUAUa -5'
28290 3' -33.5 NC_005902.1 + 29086 0.76 1
Target:  5'- uUAAUCcUUUAAUAUUUAAGCU-AUAUa -3'
miRNA:   3'- -AUUAGaAAAUUGUAAAUUCGAaUAUA- -5'
28290 3' -33.5 NC_005902.1 + 29201 0.66 1
Target:  5'- uUAAUCUUUUAACucuUUaacaccUAAGCUaUAUAUg -3'
miRNA:   3'- -AUUAGAAAAUUGu--AA------AUUCGA-AUAUA- -5'
28290 3' -33.5 NC_005902.1 + 29612 0.7 1
Target:  5'- -----cUUUAACAUUUAAGCU-AUAUa -3'
miRNA:   3'- auuagaAAAUUGUAAAUUCGAaUAUA- -5'
28290 3' -33.5 NC_005902.1 + 32864 0.69 1
Target:  5'- -uAUCUUUUAAUAccuaAAGCUUAUAc -3'
miRNA:   3'- auUAGAAAAUUGUaaa-UUCGAAUAUa -5'
28290 3' -33.5 NC_005902.1 + 33078 0.72 1
Target:  5'- uUAAUCUUUUAAauccuaAGGCUUAUAUa -3'
miRNA:   3'- -AUUAGAAAAUUguaaa-UUCGAAUAUA- -5'
28290 3' -33.5 NC_005902.1 + 36163 0.73 1
Target:  5'- ---cCUUUUAACAUcUAAGCUaUAUAUa -3'
miRNA:   3'- auuaGAAAAUUGUAaAUUCGA-AUAUA- -5'
28290 3' -33.5 NC_005902.1 + 36800 0.67 1
Target:  5'- ---cCUUUUAACAcUUAAGCUa---- -3'
miRNA:   3'- auuaGAAAAUUGUaAAUUCGAauaua -5'
28290 3' -33.5 NC_005902.1 + 37767 0.74 1
Target:  5'- -uAUCUUUUAACAccUAAGCUUGc-- -3'
miRNA:   3'- auUAGAAAAUUGUaaAUUCGAAUaua -5'
28290 3' -33.5 NC_005902.1 + 40672 0.71 1
Target:  5'- -----cUUUAACGUUUAAGCUaUAUAUa -3'
miRNA:   3'- auuagaAAAUUGUAAAUUCGA-AUAUA- -5'
28290 3' -33.5 NC_005902.1 + 41019 0.77 1
Target:  5'- aUAAUCUUUUAAUAcUUAAGCU-AUAUa -3'
miRNA:   3'- -AUUAGAAAAUUGUaAAUUCGAaUAUA- -5'
28290 3' -33.5 NC_005902.1 + 48113 0.7 1
Target:  5'- -----cUUUAACAUUUAAGCU-AUAUa -3'
miRNA:   3'- auuagaAAAUUGUAAAUUCGAaUAUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.