miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28290 3' -33.5 NC_005902.1 + 180617 0.74 1
Target:  5'- uUAAUUcUUUAACAccUAAGCUUAUAUg -3'
miRNA:   3'- -AUUAGaAAAUUGUaaAUUCGAAUAUA- -5'
28290 3' -33.5 NC_005902.1 + 174460 0.72 1
Target:  5'- uUAAUCUUUUuACAUcUAAGCU-AUAUa -3'
miRNA:   3'- -AUUAGAAAAuUGUAaAUUCGAaUAUA- -5'
28290 3' -33.5 NC_005902.1 + 169125 0.72 1
Target:  5'- --uUC-UUUAACAUUUAAGCUaUAUAg -3'
miRNA:   3'- auuAGaAAAUUGUAAAUUCGA-AUAUa -5'
28290 3' -33.5 NC_005902.1 + 165946 0.66 1
Target:  5'- ---cCUUUUAAUAcUUAAGCUaUAUAUa -3'
miRNA:   3'- auuaGAAAAUUGUaAAUUCGA-AUAUA- -5'
28290 3' -33.5 NC_005902.1 + 163388 0.73 1
Target:  5'- ---cCUUUUAACAUcUAAGCUaUAUAUg -3'
miRNA:   3'- auuaGAAAAUUGUAaAUUCGA-AUAUA- -5'
28290 3' -33.5 NC_005902.1 + 162750 0.71 1
Target:  5'- -uAUCccUUUAACAUUUAAGCU-AUAUg -3'
miRNA:   3'- auUAGa-AAAUUGUAAAUUCGAaUAUA- -5'
28290 3' -33.5 NC_005902.1 + 162018 0.81 1
Target:  5'- -cAUCUUUUAAUAUUUAAGCaUAUAc -3'
miRNA:   3'- auUAGAAAAUUGUAAAUUCGaAUAUa -5'
28290 3' -33.5 NC_005902.1 + 159737 0.75 1
Target:  5'- uUAAUCUUUUAAUAccUAAGCUaUAUAUa -3'
miRNA:   3'- -AUUAGAAAAUUGUaaAUUCGA-AUAUA- -5'
28290 3' -33.5 NC_005902.1 + 159498 0.81 1
Target:  5'- aUAAUCUuaacccUUUAACAUUUAAGCUauUAUAUa -3'
miRNA:   3'- -AUUAGA------AAAUUGUAAAUUCGA--AUAUA- -5'
28290 3' -33.5 NC_005902.1 + 156339 0.77 1
Target:  5'- ---cUUUUUAACAUUUAAGCUaUAUAUg -3'
miRNA:   3'- auuaGAAAAUUGUAAAUUCGA-AUAUA- -5'
28290 3' -33.5 NC_005902.1 + 155549 0.67 1
Target:  5'- uUGAUCUgu--AUAUUUAGGgUUAUAUa -3'
miRNA:   3'- -AUUAGAaaauUGUAAAUUCgAAUAUA- -5'
28290 3' -33.5 NC_005902.1 + 154913 0.72 1
Target:  5'- -cAUCUUUUAACAUccAAGCU-AUAUa -3'
miRNA:   3'- auUAGAAAAUUGUAaaUUCGAaUAUA- -5'
28290 3' -33.5 NC_005902.1 + 153032 0.7 1
Target:  5'- ---aCUUUUaAACAUUUAAGC-UAUGUa -3'
miRNA:   3'- auuaGAAAA-UUGUAAAUUCGaAUAUA- -5'
28290 3' -33.5 NC_005902.1 + 148237 1.08 0.581082
Target:  5'- uUAAUCUUUUAACAUUUAAGCUUAUAUa -3'
miRNA:   3'- -AUUAGAAAAUUGUAAAUUCGAAUAUA- -5'
28290 3' -33.5 NC_005902.1 + 141995 0.71 1
Target:  5'- --cUC-UUUAACAUUUAAGCU-AUAUa -3'
miRNA:   3'- auuAGaAAAUUGUAAAUUCGAaUAUA- -5'
28290 3' -33.5 NC_005902.1 + 140686 0.68 1
Target:  5'- --cUCUUUUAACAUccAAGCU-AUAa -3'
miRNA:   3'- auuAGAAAAUUGUAaaUUCGAaUAUa -5'
28290 3' -33.5 NC_005902.1 + 137434 0.68 1
Target:  5'- ---cCUUUUAACAUcUAAGCUa---- -3'
miRNA:   3'- auuaGAAAAUUGUAaAUUCGAauaua -5'
28290 3' -33.5 NC_005902.1 + 135985 0.67 1
Target:  5'- uUAAUCUUUUAACAccUAAGUaUAUu- -3'
miRNA:   3'- -AUUAGAAAAUUGUaaAUUCGaAUAua -5'
28290 3' -33.5 NC_005902.1 + 135892 0.71 1
Target:  5'- --cUC-UUUAACAUUUAAGC-UAUGUa -3'
miRNA:   3'- auuAGaAAAUUGUAAAUUCGaAUAUA- -5'
28290 3' -33.5 NC_005902.1 + 134581 0.7 1
Target:  5'- -----cUUUAACAUUUAAGCU-AUAUa -3'
miRNA:   3'- auuagaAAAUUGUAAAUUCGAaUAUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.