miRNA display CGI


Results 1 - 20 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28290 5' -42 NC_005902.1 + 133259 0.66 1
Target:  5'- ---cAGCAuucacuuuauauaaCUUAGGUGUUAAAAGGu -3'
miRNA:   3'- cguaUCGUuc------------GAAUCCACAAUUUUCU- -5'
28290 5' -42 NC_005902.1 + 182662 0.69 1
Target:  5'- uGUAU-GUAuAGCUUAGGUGUaacccuuuaaaaacUAAAAGAu -3'
miRNA:   3'- -CGUAuCGU-UCGAAUCCACA--------------AUUUUCU- -5'
28290 5' -42 NC_005902.1 + 31446 0.69 1
Target:  5'- aGUGUAGCAagugaguauauAGCUUAGGUaaaggGUUAAAAa- -3'
miRNA:   3'- -CGUAUCGU-----------UCGAAUCCA-----CAAUUUUcu -5'
28290 5' -42 NC_005902.1 + 49465 0.69 1
Target:  5'- aGCAaauaAGUAuauaaCUUAGGUGUUAAAGGGu -3'
miRNA:   3'- -CGUa---UCGUuc---GAAUCCACAAUUUUCU- -5'
28290 5' -42 NC_005902.1 + 164721 0.69 1
Target:  5'- aUAUAGUAagaguauauAGCUUAGaUGUUAAAAGGu -3'
miRNA:   3'- cGUAUCGU---------UCGAAUCcACAAUUUUCU- -5'
28290 5' -42 NC_005902.1 + 100413 0.68 1
Target:  5'- aUAUAGCGagucaguauauAGCUUaAGG-GUUAAAGGAu -3'
miRNA:   3'- cGUAUCGU-----------UCGAA-UCCaCAAUUUUCU- -5'
28290 5' -42 NC_005902.1 + 181418 0.66 1
Target:  5'- aGCAUaaagAGUAAguauaucGCUUAGaUGUUAAAGGAu -3'
miRNA:   3'- -CGUA----UCGUU-------CGAAUCcACAAUUUUCU- -5'
28290 5' -42 NC_005902.1 + 52206 0.69 1
Target:  5'- gGUAUAuCA--CUUAGGUGUUAAAGGGu -3'
miRNA:   3'- -CGUAUcGUucGAAUCCACAAUUUUCU- -5'
28290 5' -42 NC_005902.1 + 113820 0.69 1
Target:  5'- uGUAUAuauAGUUUAGGUGUUAAcGGAu -3'
miRNA:   3'- -CGUAUcguUCGAAUCCACAAUUuUCU- -5'
28290 5' -42 NC_005902.1 + 157100 0.69 1
Target:  5'- aGCAUAGCAaauaaguauaAGCuUUAGGauUUAAAGGGu -3'
miRNA:   3'- -CGUAUCGU----------UCG-AAUCCacAAUUUUCU- -5'
28290 5' -42 NC_005902.1 + 151227 0.69 1
Target:  5'- aGUAUA-UAA-CUUAGGUGUUAAAGGGu -3'
miRNA:   3'- -CGUAUcGUUcGAAUCCACAAUUUUCU- -5'
28290 5' -42 NC_005902.1 + 137649 0.68 1
Target:  5'- aGCAUauugaauaAGUAcauaaCUUAGGUGUUAAAGGGu -3'
miRNA:   3'- -CGUA--------UCGUuc---GAAUCCACAAUUUUCU- -5'
28290 5' -42 NC_005902.1 + 137785 0.66 1
Target:  5'- uGUAUAuauAGCUUAaGUGUUAAAGGAu -3'
miRNA:   3'- -CGUAUcguUCGAAUcCACAAUUUUCU- -5'
28290 5' -42 NC_005902.1 + 36343 0.67 1
Target:  5'- aGCAUAGUGaaugaauauauAGCUUAGGU---AAAGGGu -3'
miRNA:   3'- -CGUAUCGU-----------UCGAAUCCAcaaUUUUCU- -5'
28290 5' -42 NC_005902.1 + 171283 0.67 1
Target:  5'- --uUAGCAAcauGUUUGGG-GUUAAAGGGu -3'
miRNA:   3'- cguAUCGUU---CGAAUCCaCAAUUUUCU- -5'
28290 5' -42 NC_005902.1 + 116816 0.67 1
Target:  5'- ---gAGUAuaCUUAGGUGUUAAAGGu -3'
miRNA:   3'- cguaUCGUucGAAUCCACAAUUUUCu -5'
28290 5' -42 NC_005902.1 + 93880 0.67 1
Target:  5'- ---aAGUAuauAGCUUAGuUGUUAAAAGAu -3'
miRNA:   3'- cguaUCGU---UCGAAUCcACAAUUUUCU- -5'
28290 5' -42 NC_005902.1 + 153163 0.68 1
Target:  5'- aGUAUAGUAaauuaguauaAGCuUUAGGUaUUAAAAGAu -3'
miRNA:   3'- -CGUAUCGU----------UCG-AAUCCAcAAUUUUCU- -5'
28290 5' -42 NC_005902.1 + 11449 0.68 1
Target:  5'- cGUAUAu--AGCUUAGGUGUUAAc--- -3'
miRNA:   3'- -CGUAUcguUCGAAUCCACAAUUuucu -5'
28290 5' -42 NC_005902.1 + 155242 0.68 1
Target:  5'- aGCGUAuauAGCUUAGaUGUUAAAGGGu -3'
miRNA:   3'- -CGUAUcguUCGAAUCcACAAUUUUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.