miRNA display CGI


Results 1 - 20 of 300 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28291 3' -44.8 NC_005902.1 + 16513 0.68 0.999945
Target:  5'- aACCCUguaacACCUGAGaUAUAUAgCUCAg -3'
miRNA:   3'- -UGGGAaa---UGGAUUCgAUAUAU-GAGUg -5'
28291 3' -44.8 NC_005902.1 + 130953 0.67 0.999995
Target:  5'- aAUCCUUuaaUACUUAAGUUAUAUACa--- -3'
miRNA:   3'- -UGGGAA---AUGGAUUCGAUAUAUGagug -5'
28291 3' -44.8 NC_005902.1 + 69370 0.67 0.999989
Target:  5'- uACCgUUUaacACCUAAaCUAUAUGCUUAUu -3'
miRNA:   3'- -UGGgAAA---UGGAUUcGAUAUAUGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 135890 0.67 0.999984
Target:  5'- aACUCUUUaacAUUUAAGCUAUGUACaaacaagCACa -3'
miRNA:   3'- -UGGGAAA---UGGAUUCGAUAUAUGa------GUG- -5'
28291 3' -44.8 NC_005902.1 + 162752 0.68 0.999978
Target:  5'- uCCCUUUaacAUUUAAGCUAUAUGCa--- -3'
miRNA:   3'- uGGGAAA---UGGAUUCGAUAUAUGagug -5'
28291 3' -44.8 NC_005902.1 + 37767 0.68 0.99997
Target:  5'- uAUCUUUUaacACCUAAGCUugcUAUGCUUAUu -3'
miRNA:   3'- -UGGGAAA---UGGAUUCGAu--AUAUGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 133833 0.68 0.999959
Target:  5'- cACCCUUUaacACCUAAGUgaUAUAccuguuUGCUUAUg -3'
miRNA:   3'- -UGGGAAA---UGGAUUCG--AUAU------AUGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 118518 0.68 0.999959
Target:  5'- gAUuuUUUAaucUUUGAGCUAUAUACUCAUu -3'
miRNA:   3'- -UGggAAAU---GGAUUCGAUAUAUGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 159739 0.68 0.999945
Target:  5'- aAUCUUUuaaUACCUAAGCUAUAUAUa--- -3'
miRNA:   3'- -UGGGAA---AUGGAUUCGAUAUAUGagug -5'
28291 3' -44.8 NC_005902.1 + 175611 0.67 0.999995
Target:  5'- uACCCUUuaaUACgUAAGCcGUAUACaaACa -3'
miRNA:   3'- -UGGGAA---AUGgAUUCGaUAUAUGagUG- -5'
28291 3' -44.8 NC_005902.1 + 39416 0.66 0.999996
Target:  5'- -----aUACCUAAGCUAUAUACg--- -3'
miRNA:   3'- ugggaaAUGGAUUCGAUAUAUGagug -5'
28291 3' -44.8 NC_005902.1 + 135964 0.66 0.999996
Target:  5'- -----aUACCUAAGCUAUAUACa--- -3'
miRNA:   3'- ugggaaAUGGAUUCGAUAUAUGagug -5'
28291 3' -44.8 NC_005902.1 + 133560 0.66 0.999999
Target:  5'- aACCCUUUAaauCCUAGgGCU-UAUAUUCGu -3'
miRNA:   3'- -UGGGAAAU---GGAUU-CGAuAUAUGAGUg -5'
28291 3' -44.8 NC_005902.1 + 104900 0.66 0.999999
Target:  5'- uAUCCUUUAaauCCUAagGGUUGUAuucuuucacuaUACUCACu -3'
miRNA:   3'- -UGGGAAAU---GGAU--UCGAUAU-----------AUGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 120372 0.66 0.999998
Target:  5'- cCCCUUUAaauCCUAAgGCU-UAUACUUAUu -3'
miRNA:   3'- uGGGAAAU---GGAUU-CGAuAUAUGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 42524 0.66 0.999997
Target:  5'- uACCCUUUAaauCCUAAcguuuGCUAc--ACUCACu -3'
miRNA:   3'- -UGGGAAAU---GGAUU-----CGAUauaUGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 5112 0.66 0.999997
Target:  5'- cACUCUUUaacAUCUAAGCaAUAUAUUUGCu -3'
miRNA:   3'- -UGGGAAA---UGGAUUCGaUAUAUGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 22552 0.66 0.999997
Target:  5'- aAUCCUUUAaauCCUAAGgCUAuacuuguuugcUAUACUUACu -3'
miRNA:   3'- -UGGGAAAU---GGAUUC-GAU-----------AUAUGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 148751 0.66 0.999996
Target:  5'- uAUCCUUUaacACUUAAGCUAUAUGa--ACg -3'
miRNA:   3'- -UGGGAAA---UGGAUUCGAUAUAUgagUG- -5'
28291 3' -44.8 NC_005902.1 + 38417 0.66 0.999996
Target:  5'- ------cAUCUAAGCUAUAcACUCACu -3'
miRNA:   3'- ugggaaaUGGAUUCGAUAUaUGAGUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.