miRNA display CGI


Results 1 - 20 of 289 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28292 3' -38.8 NC_005902.1 + 67590 0.66 1
Target:  5'- -----gUUAACAUCUAAGCUcauuUAUAUa -3'
miRNA:   3'- guagaaAAUUGUAGGUUCGAu---AUAUG- -5'
28292 3' -38.8 NC_005902.1 + 45314 0.66 1
Target:  5'- aGUUgggUUAAaAUUUAAGCUAUAUACu -3'
miRNA:   3'- gUAGaa-AAUUgUAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 183490 0.67 1
Target:  5'- --gCUgaaauauGCAUCCAAGCUAgauUACc -3'
miRNA:   3'- guaGAaaau---UGUAGGUUCGAUau-AUG- -5'
28292 3' -38.8 NC_005902.1 + 19883 0.67 1
Target:  5'- aAUCU--UAAUAUCUAAGCUAcAUGa -3'
miRNA:   3'- gUAGAaaAUUGUAGGUUCGAUaUAUg -5'
28292 3' -38.8 NC_005902.1 + 84446 0.67 1
Target:  5'- -------gAugGUCC-AGCUAUAUGCa -3'
miRNA:   3'- guagaaaaUugUAGGuUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 66389 0.67 1
Target:  5'- cCAUCUUUUAcaAUAgaugauauuucuuuUCCuAGUUGUGUACa -3'
miRNA:   3'- -GUAGAAAAU--UGU--------------AGGuUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 23608 0.67 1
Target:  5'- -cUC-UUUAACAcCUAAGCUAUAcACa -3'
miRNA:   3'- guAGaAAAUUGUaGGUUCGAUAUaUG- -5'
28292 3' -38.8 NC_005902.1 + 111387 0.67 1
Target:  5'- aUAUCgcUUUAACAccacCUAAGUUAUAUACu -3'
miRNA:   3'- -GUAGa-AAAUUGUa---GGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 114250 0.67 1
Target:  5'- ----aUUUAAUAUCUAAGaUAUAUACa -3'
miRNA:   3'- guagaAAAUUGUAGGUUCgAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 174999 0.67 1
Target:  5'- -----gUUAAUA-CUAAGCUAUAUACu -3'
miRNA:   3'- guagaaAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 144983 0.67 1
Target:  5'- aAUCcUUUAAUAcuaAAGCUAUAUACa -3'
miRNA:   3'- gUAGaAAAUUGUaggUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 130953 0.66 1
Target:  5'- aAUCcUUUAAUAcUUAAGUUAUAUACa -3'
miRNA:   3'- gUAGaAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 131667 0.66 1
Target:  5'- ----cUUUAACAcCUAAGCUAUAcaUACa -3'
miRNA:   3'- guagaAAAUUGUaGGUUCGAUAU--AUG- -5'
28292 3' -38.8 NC_005902.1 + 184748 0.66 1
Target:  5'- aAUCc--UAACAcCUGAGCUAUAUAUa -3'
miRNA:   3'- gUAGaaaAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 179693 0.66 1
Target:  5'- uUAUCcUUUAAaacCUAAGCUAUAUAUa -3'
miRNA:   3'- -GUAGaAAAUUguaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 40068 0.66 1
Target:  5'- ----cUUUAACAcUUAAGCUAUAUAUg -3'
miRNA:   3'- guagaAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 57237 0.66 1
Target:  5'- -cUC-UUUAACAUCUuAGCUGUGa-- -3'
miRNA:   3'- guAGaAAAUUGUAGGuUCGAUAUaug -5'
28292 3' -38.8 NC_005902.1 + 109361 0.66 1
Target:  5'- ----cUUUAACAcUUAAGCUAUAUAUa -3'
miRNA:   3'- guagaAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 137754 0.66 1
Target:  5'- ----cUUUAACAcUUAAGCUAUAUAUa -3'
miRNA:   3'- guagaAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 142148 0.66 1
Target:  5'- --cUUUUUAAcCAUCUAuuuaAGCUAUAUAUg -3'
miRNA:   3'- guaGAAAAUU-GUAGGU----UCGAUAUAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.