Results 41 - 60 of 289 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28292 | 3' | -38.8 | NC_005902.1 | + | 57237 | 0.66 | 1 |
Target: 5'- -cUC-UUUAACAUCUuAGCUGUGa-- -3' miRNA: 3'- guAGaAAAUUGUAGGuUCGAUAUaug -5' |
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28292 | 3' | -38.8 | NC_005902.1 | + | 109361 | 0.66 | 1 |
Target: 5'- ----cUUUAACAcUUAAGCUAUAUAUa -3' miRNA: 3'- guagaAAAUUGUaGGUUCGAUAUAUG- -5' |
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28292 | 3' | -38.8 | NC_005902.1 | + | 137754 | 0.66 | 1 |
Target: 5'- ----cUUUAACAcUUAAGCUAUAUAUa -3' miRNA: 3'- guagaAAAUUGUaGGUUCGAUAUAUG- -5' |
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28292 | 3' | -38.8 | NC_005902.1 | + | 142148 | 0.66 | 1 |
Target: 5'- --cUUUUUAAcCAUCUAuuuaAGCUAUAUAUg -3' miRNA: 3'- guaGAAAAUU-GUAGGU----UCGAUAUAUG- -5' |
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28292 | 3' | -38.8 | NC_005902.1 | + | 177828 | 0.66 | 1 |
Target: 5'- -----aUUAACuuugCCuAAGCUAUAUACa -3' miRNA: 3'- guagaaAAUUGua--GG-UUCGAUAUAUG- -5' |
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28292 | 3' | -38.8 | NC_005902.1 | + | 111387 | 0.67 | 1 |
Target: 5'- aUAUCgcUUUAACAccacCUAAGUUAUAUACu -3' miRNA: 3'- -GUAGa-AAAUUGUa---GGUUCGAUAUAUG- -5' |
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28292 | 3' | -38.8 | NC_005902.1 | + | 23608 | 0.67 | 1 |
Target: 5'- -cUC-UUUAACAcCUAAGCUAUAcACa -3' miRNA: 3'- guAGaAAAUUGUaGGUUCGAUAUaUG- -5' |
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28292 | 3' | -38.8 | NC_005902.1 | + | 48508 | 0.68 | 1 |
Target: 5'- -----gUUAAUAUCUAAGCcAUAUACu -3' miRNA: 3'- guagaaAAUUGUAGGUUCGaUAUAUG- -5' |
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28292 | 3' | -38.8 | NC_005902.1 | + | 22618 | 0.68 | 1 |
Target: 5'- -----gUUAACAcCUAAGCUAUAUAUu -3' miRNA: 3'- guagaaAAUUGUaGGUUCGAUAUAUG- -5' |
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28292 | 3' | -38.8 | NC_005902.1 | + | 107921 | 0.68 | 1 |
Target: 5'- --cCUUUauaAAC-UCUAAGCUAUAUACu -3' miRNA: 3'- guaGAAAa--UUGuAGGUUCGAUAUAUG- -5' |
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28292 | 3' | -38.8 | NC_005902.1 | + | 114547 | 0.68 | 1 |
Target: 5'- ----cUUUAACAcCUAGGCUAUAUAa -3' miRNA: 3'- guagaAAAUUGUaGGUUCGAUAUAUg -5' |
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28292 | 3' | -38.8 | NC_005902.1 | + | 122515 | 0.68 | 1 |
Target: 5'- gUAUUUacgUUUAACcUCUAGGUUAUAUACc -3' miRNA: 3'- -GUAGA---AAAUUGuAGGUUCGAUAUAUG- -5' |
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28292 | 3' | -38.8 | NC_005902.1 | + | 158231 | 0.68 | 1 |
Target: 5'- ----cUUUAAUGcCUAAGCUAUAUACa -3' miRNA: 3'- guagaAAAUUGUaGGUUCGAUAUAUG- -5' |
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28292 | 3' | -38.8 | NC_005902.1 | + | 32357 | 0.68 | 1 |
Target: 5'- -----gUUAACAUCUAAaCUAUAUACu -3' miRNA: 3'- guagaaAAUUGUAGGUUcGAUAUAUG- -5' |
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28292 | 3' | -38.8 | NC_005902.1 | + | 90061 | 0.68 | 1 |
Target: 5'- -----cUUAACAcCUAAGUUAUAUACa -3' miRNA: 3'- guagaaAAUUGUaGGUUCGAUAUAUG- -5' |
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28292 | 3' | -38.8 | NC_005902.1 | + | 109996 | 0.67 | 1 |
Target: 5'- uUAUCcUUcAAUAUCUAAGCUAUAUu- -3' miRNA: 3'- -GUAGaAAaUUGUAGGUUCGAUAUAug -5' |
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28292 | 3' | -38.8 | NC_005902.1 | + | 183490 | 0.67 | 1 |
Target: 5'- --gCUgaaauauGCAUCCAAGCUAgauUACc -3' miRNA: 3'- guaGAaaau---UGUAGGUUCGAUau-AUG- -5' |
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28292 | 3' | -38.8 | NC_005902.1 | + | 19883 | 0.67 | 1 |
Target: 5'- aAUCU--UAAUAUCUAAGCUAcAUGa -3' miRNA: 3'- gUAGAaaAUUGUAGGUUCGAUaUAUg -5' |
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28292 | 3' | -38.8 | NC_005902.1 | + | 84446 | 0.67 | 1 |
Target: 5'- -------gAugGUCC-AGCUAUAUGCa -3' miRNA: 3'- guagaaaaUugUAGGuUCGAUAUAUG- -5' |
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28292 | 3' | -38.8 | NC_005902.1 | + | 66389 | 0.67 | 1 |
Target: 5'- cCAUCUUUUAcaAUAgaugauauuucuuuUCCuAGUUGUGUACa -3' miRNA: 3'- -GUAGAAAAU--UGU--------------AGGuUCGAUAUAUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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