miRNA display CGI


Results 41 - 60 of 289 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28292 3' -38.8 NC_005902.1 + 158231 0.68 1
Target:  5'- ----cUUUAAUGcCUAAGCUAUAUACa -3'
miRNA:   3'- guagaAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 158110 0.69 1
Target:  5'- uUAUCUuuaacccUUUAAUAcUUAAGCUAUAUACa -3'
miRNA:   3'- -GUAGA-------AAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 157852 0.7 1
Target:  5'- ----aUUUAACAcCUAAGCUAUAUAUu -3'
miRNA:   3'- guagaAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 157231 0.76 0.999982
Target:  5'- ----cUUUAACAcCUAAGCUAUAUACa -3'
miRNA:   3'- guagaAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 156786 0.72 1
Target:  5'- aAUCc--UAACAcCUAAGCUAUAUACu -3'
miRNA:   3'- gUAGaaaAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 156549 0.79 0.999552
Target:  5'- --cCUUUUAACAcCUAAGCUAUAUAUu -3'
miRNA:   3'- guaGAAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 156431 0.85 0.972912
Target:  5'- --cCUUUUAACAcCUAAGCUAUAUACa -3'
miRNA:   3'- guaGAAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 156339 0.8 0.998615
Target:  5'- --cUUUUUAACAUUUAAGCUAUAUAUg -3'
miRNA:   3'- guaGAAAAUUGUAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 155201 0.91 0.834583
Target:  5'- uUAUCUuuuuaacccUUUAACAUCUAAGCUAUAUACa -3'
miRNA:   3'- -GUAGA---------AAAUUGUAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 154912 1.13 0.115091
Target:  5'- uCAUCUUUUAACAUCCAAGCUAUAUACu -3'
miRNA:   3'- -GUAGAAAAUUGUAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 154578 0.67 1
Target:  5'- --aUUUUUAACccuuuacCUAAGCUAUAUACu -3'
miRNA:   3'- guaGAAAAUUGua-----GGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 153032 0.81 0.997927
Target:  5'- --aCUUUUaAACAUUUAAGCUAUGUACa -3'
miRNA:   3'- guaGAAAA-UUGUAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 151286 0.74 0.999999
Target:  5'- aAUCU--UAACAcCUAAGCUAUAUAUa -3'
miRNA:   3'- gUAGAaaAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 149799 0.71 1
Target:  5'- ---aUUUUAACAcCUAAGUUAUGUACu -3'
miRNA:   3'- guagAAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 149198 0.8 0.998615
Target:  5'- aAUUUUUUAAUAcCUAAGCUAUAUACu -3'
miRNA:   3'- gUAGAAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 149102 0.68 1
Target:  5'- --cCUUUUAAC-UCCAGGCU---UACu -3'
miRNA:   3'- guaGAAAAUUGuAGGUUCGAuauAUG- -5'
28292 3' -38.8 NC_005902.1 + 148750 0.69 1
Target:  5'- uUAUCcUUUAACAcUUAAGCUAUAUGa -3'
miRNA:   3'- -GUAGaAAAUUGUaGGUUCGAUAUAUg -5'
28292 3' -38.8 NC_005902.1 + 148239 0.88 0.915313
Target:  5'- aAUCUUUUAACAUUUAAGCUuAUAUACa -3'
miRNA:   3'- gUAGAAAAUUGUAGGUUCGA-UAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 147755 0.75 0.999998
Target:  5'- ----cUUUAACAUCUAAGCUAUAa-- -3'
miRNA:   3'- guagaAAAUUGUAGGUUCGAUAUaug -5'
28292 3' -38.8 NC_005902.1 + 147589 0.72 1
Target:  5'- aAUCcugUAACAcCUAAGCUAUAUAUa -3'
miRNA:   3'- gUAGaaaAUUGUaGGUUCGAUAUAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.