miRNA display CGI


Results 1 - 20 of 289 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28292 3' -38.8 NC_005902.1 + 184864 0.71 1
Target:  5'- ----cUUUAACAcCUAAGCUGUAUAUa -3'
miRNA:   3'- guagaAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 184748 0.66 1
Target:  5'- aAUCc--UAACAcCUGAGCUAUAUAUa -3'
miRNA:   3'- gUAGaaaAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 184592 0.69 1
Target:  5'- ----cUUUAACAcUUAAGCUAUAUACu -3'
miRNA:   3'- guagaAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 183490 0.67 1
Target:  5'- --gCUgaaauauGCAUCCAAGCUAgauUACc -3'
miRNA:   3'- guaGAaaau---UGUAGGUUCGAUau-AUG- -5'
28292 3' -38.8 NC_005902.1 + 182934 0.74 0.999999
Target:  5'- ---aUUUUAACAcCUAAGCUAUAUAUg -3'
miRNA:   3'- guagAAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 182565 0.79 0.999552
Target:  5'- ---aUUUUAACAcCUAAGCUAUAUACa -3'
miRNA:   3'- guagAAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 180886 0.67 1
Target:  5'- ----cUUUAACAUCUAAGCaAUAUcACa -3'
miRNA:   3'- guagaAAAUUGUAGGUUCGaUAUA-UG- -5'
28292 3' -38.8 NC_005902.1 + 180349 0.72 1
Target:  5'- aAUUcUUUAACccCUAAGCUAUAUACa -3'
miRNA:   3'- gUAGaAAAUUGuaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 179813 0.75 0.999997
Target:  5'- ----cUUUAACAaCUAAGCUAUAUACu -3'
miRNA:   3'- guagaAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 179693 0.66 1
Target:  5'- uUAUCcUUUAAaacCUAAGCUAUAUAUa -3'
miRNA:   3'- -GUAGaAAAUUguaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 178359 0.68 1
Target:  5'- aAUUUUUUuACucuacCUAAGCUAUAUACa -3'
miRNA:   3'- gUAGAAAAuUGua---GGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 177892 0.69 1
Target:  5'- -----aUUAAUAaCUAAGCUAUAUACg -3'
miRNA:   3'- guagaaAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 177828 0.66 1
Target:  5'- -----aUUAACuuugCCuAAGCUAUAUACa -3'
miRNA:   3'- guagaaAAUUGua--GG-UUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 175764 0.69 1
Target:  5'- --------uAC-UCCAAGCUAUAUACa -3'
miRNA:   3'- guagaaaauUGuAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 174999 0.67 1
Target:  5'- -----gUUAAUA-CUAAGCUAUAUACu -3'
miRNA:   3'- guagaaAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 174974 0.66 1
Target:  5'- ------cUAACAcUUAAGCUAUAUACa -3'
miRNA:   3'- guagaaaAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 174577 0.78 0.99987
Target:  5'- uGUCUUugauagugaccgagUUAACAcCUAAGCUAUAUACg -3'
miRNA:   3'- gUAGAA--------------AAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 174462 0.94 0.696572
Target:  5'- aAUCUUUUuACAUCUAAGCUAUAUACu -3'
miRNA:   3'- gUAGAAAAuUGUAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 172818 0.71 1
Target:  5'- ----cUUUAACAcCUAAGCUAUAUAUg -3'
miRNA:   3'- guagaAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 172608 0.69 1
Target:  5'- ----cUUUAACAcUUAAGCUAUAUACu -3'
miRNA:   3'- guagaAAAUUGUaGGUUCGAUAUAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.