miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28293 3' -47.8 NC_005902.1 + 20089 0.66 0.999866
Target:  5'- -aUGUCAUCGAUGACAUgagUUAGGaGUa -3'
miRNA:   3'- ugACAGUAGUUAUUGUGg--AAUCCcCA- -5'
28293 3' -47.8 NC_005902.1 + 5283 0.66 0.999826
Target:  5'- cAUUGUU---GAUAACACCUUaggaauuaAGGGGUu -3'
miRNA:   3'- -UGACAGuagUUAUUGUGGAA--------UCCCCA- -5'
28293 3' -47.8 NC_005902.1 + 93505 0.66 0.999826
Target:  5'- ---aUUGUCAAUGACACUUUaggagucaGGGGGUu -3'
miRNA:   3'- ugacAGUAGUUAUUGUGGAA--------UCCCCA- -5'
28293 3' -47.8 NC_005902.1 + 90161 0.66 0.999776
Target:  5'- -gUGUUGUUGAUAAUGCCUUAGGaGUu -3'
miRNA:   3'- ugACAGUAGUUAUUGUGGAAUCCcCA- -5'
28293 3' -47.8 NC_005902.1 + 82101 0.66 0.999715
Target:  5'- ---aUCAUCAAUGAUGCUUUaagaauuaaAGGGGUu -3'
miRNA:   3'- ugacAGUAGUUAUUGUGGAA---------UCCCCA- -5'
28293 3' -47.8 NC_005902.1 + 67081 0.66 0.999715
Target:  5'- ---aUCAUCAAcAACACCUUAGGa-- -3'
miRNA:   3'- ugacAGUAGUUaUUGUGGAAUCCcca -5'
28293 3' -47.8 NC_005902.1 + 121577 0.66 0.999639
Target:  5'- uACUGauguuucgcaUCAUUAAUAAUGCCUUAGuugaaGGGUu -3'
miRNA:   3'- -UGAC----------AGUAGUUAUUGUGGAAUC-----CCCA- -5'
28293 3' -47.8 NC_005902.1 + 96071 0.67 0.999432
Target:  5'- gUUGUUGUUGAUAAUGCCUUAGGaGUu -3'
miRNA:   3'- uGACAGUAGUUAUUGUGGAAUCCcCA- -5'
28293 3' -47.8 NC_005902.1 + 23570 0.67 0.999295
Target:  5'- -aUGcCAUCAAcAACACCUUAGGa-- -3'
miRNA:   3'- ugACaGUAGUUaUUGUGGAAUCCcca -5'
28293 3' -47.8 NC_005902.1 + 63231 0.67 0.99913
Target:  5'- uAUUGUCAUCGAUGACACUUUGu---- -3'
miRNA:   3'- -UGACAGUAGUUAUUGUGGAAUcccca -5'
28293 3' -47.8 NC_005902.1 + 136153 0.67 0.998933
Target:  5'- -aUGUUAUCGAUAAUGCUUUAGGa-- -3'
miRNA:   3'- ugACAGUAGUUAUUGUGGAAUCCcca -5'
28293 3' -47.8 NC_005902.1 + 106087 0.67 0.998912
Target:  5'- cACUGUCAUCAAcgaugcuuugcauUAAUgauGCCUUAGGaGUu -3'
miRNA:   3'- -UGACAGUAGUU-------------AUUG---UGGAAUCCcCA- -5'
28293 3' -47.8 NC_005902.1 + 149287 0.68 0.997722
Target:  5'- ---aUCAUCGAUGAUGCCUUAGGa-- -3'
miRNA:   3'- ugacAGUAGUUAUUGUGGAAUCCcca -5'
28293 3' -47.8 NC_005902.1 + 157951 0.68 0.997722
Target:  5'- -gUGUCAUUGAUGAUACUUUAGGa-- -3'
miRNA:   3'- ugACAGUAGUUAUUGUGGAAUCCcca -5'
28293 3' -47.8 NC_005902.1 + 95546 0.69 0.997283
Target:  5'- --cGUCAUCGAUGAUGCCUUaagaguuaaAGGGu- -3'
miRNA:   3'- ugaCAGUAGUUAUUGUGGAA---------UCCCca -5'
28293 3' -47.8 NC_005902.1 + 71291 0.69 0.997236
Target:  5'- aACguaUUAUCAAUGAUGCCUugggaguUAGGGGUu -3'
miRNA:   3'- -UGac-AGUAGUUAUUGUGGA-------AUCCCCA- -5'
28293 3' -47.8 NC_005902.1 + 49617 0.69 0.995528
Target:  5'- uACUGUguUUAcuuAUAuaaGCCUUAGGGGUu -3'
miRNA:   3'- -UGACAguAGU---UAUug-UGGAAUCCCCA- -5'
28293 3' -47.8 NC_005902.1 + 139892 0.7 0.99391
Target:  5'- -aUGUCAUUGAUAAUAUCUUAGGaGUu -3'
miRNA:   3'- ugACAGUAGUUAUUGUGGAAUCCcCA- -5'
28293 3' -47.8 NC_005902.1 + 142445 0.7 0.99391
Target:  5'- -gUGUUAUCGAUGACAUUUUAGGaGUu -3'
miRNA:   3'- ugACAGUAGUUAUUGUGGAAUCCcCA- -5'
28293 3' -47.8 NC_005902.1 + 94968 0.7 0.992941
Target:  5'- ---aUCAUCAAUAAUGCCUUAGGaGUu -3'
miRNA:   3'- ugacAGUAGUUAUUGUGGAAUCCcCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.