miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28295 3' -44.7 NC_005902.1 + 114653 0.66 0.999999
Target:  5'- -uUUAAAUCCUAAGGUgguacuguagACACUaaUGUg -3'
miRNA:   3'- ucAAUUUGGGAUUCCGaa--------UGUGA--ACA- -5'
28295 3' -44.7 NC_005902.1 + 143820 0.66 0.999999
Target:  5'- gAGUgcuuACCUuuUAAGGCUUAUACaaGUg -3'
miRNA:   3'- -UCAauu-UGGG--AUUCCGAAUGUGaaCA- -5'
28295 3' -44.7 NC_005902.1 + 28932 0.66 0.999998
Target:  5'- -uUUAAAUCCUAA-GCUUAUACUUa- -3'
miRNA:   3'- ucAAUUUGGGAUUcCGAAUGUGAAca -5'
28295 3' -44.7 NC_005902.1 + 78630 0.67 0.999996
Target:  5'- -uUUAAAUuuUAAGGCUUAUACaaGUa -3'
miRNA:   3'- ucAAUUUGggAUUCCGAAUGUGaaCA- -5'
28295 3' -44.7 NC_005902.1 + 171092 0.67 0.999995
Target:  5'- ----uAAUCCUAAGGUUUAUACgaGUg -3'
miRNA:   3'- ucaauUUGGGAUUCCGAAUGUGaaCA- -5'
28295 3' -44.7 NC_005902.1 + 166207 0.67 0.999993
Target:  5'- ----uAAUUCaUAAGGCUUAUACUUGUu -3'
miRNA:   3'- ucaauUUGGG-AUUCCGAAUGUGAACA- -5'
28295 3' -44.7 NC_005902.1 + 12179 0.67 0.999989
Target:  5'- --aUAAAUCCUAAGGUUUAUAUaagUGa -3'
miRNA:   3'- ucaAUUUGGGAUUCCGAAUGUGa--ACa -5'
28295 3' -44.7 NC_005902.1 + 161846 0.67 0.999989
Target:  5'- -aUUAAAUCUUAAGGCUcAUACaUGUg -3'
miRNA:   3'- ucAAUUUGGGAUUCCGAaUGUGaACA- -5'
28295 3' -44.7 NC_005902.1 + 13338 0.68 0.999985
Target:  5'- aAGUUAAcCCCUAAGGCaucauugacaACACUUc- -3'
miRNA:   3'- -UCAAUUuGGGAUUCCGaa--------UGUGAAca -5'
28295 3' -44.7 NC_005902.1 + 116778 0.68 0.999985
Target:  5'- -uUUAAAUUCUAAGGCUUAUAUaagUGa -3'
miRNA:   3'- ucAAUUUGGGAUUCCGAAUGUGa--ACa -5'
28295 3' -44.7 NC_005902.1 + 90546 0.69 0.999839
Target:  5'- -uUUGAAUCUUAAaGCUUAUACUUGUu -3'
miRNA:   3'- ucAAUUUGGGAUUcCGAAUGUGAACA- -5'
28295 3' -44.7 NC_005902.1 + 27881 0.69 0.999839
Target:  5'- gGGUUAAugCCUAAG-CUauauaUGCAUUUGUu -3'
miRNA:   3'- -UCAAUUugGGAUUCcGA-----AUGUGAACA- -5'
28295 3' -44.7 NC_005902.1 + 24160 0.7 0.999731
Target:  5'- -aUUAAAUCC-AAGGCUcAUACUUGUu -3'
miRNA:   3'- ucAAUUUGGGaUUCCGAaUGUGAACA- -5'
28295 3' -44.7 NC_005902.1 + 162705 0.7 0.999656
Target:  5'- gGGUUAAACCCUAAuGUUUGCaauGCUUa- -3'
miRNA:   3'- -UCAAUUUGGGAUUcCGAAUG---UGAAca -5'
28295 3' -44.7 NC_005902.1 + 136415 0.7 0.999656
Target:  5'- -uUUAAcCCCUAAGGCUUAUAUa--- -3'
miRNA:   3'- ucAAUUuGGGAUUCCGAAUGUGaaca -5'
28295 3' -44.7 NC_005902.1 + 82112 0.71 0.999149
Target:  5'- cAGUUuucAAUCCUAAGGCUUAUAUaagUGa -3'
miRNA:   3'- -UCAAu--UUGGGAUUCCGAAUGUGa--ACa -5'
28295 3' -44.7 NC_005902.1 + 46990 0.71 0.998712
Target:  5'- -uUUAAAUCUUAAGGCUUAUACa--- -3'
miRNA:   3'- ucAAUUUGGGAUUCCGAAUGUGaaca -5'
28295 3' -44.7 NC_005902.1 + 10242 0.73 0.996122
Target:  5'- aGGaUUAAAUUCUAAGGCUUAUACUc-- -3'
miRNA:   3'- -UC-AAUUUGGGAUUCCGAAUGUGAaca -5'
28295 3' -44.7 NC_005902.1 + 88504 0.73 0.995426
Target:  5'- -uUUAAACCCcGAGGCUUAUAUgagUGa -3'
miRNA:   3'- ucAAUUUGGGaUUCCGAAUGUGa--ACa -5'
28295 3' -44.7 NC_005902.1 + 91172 0.73 0.994632
Target:  5'- gGGUaAAAUCCUcuAAGGCUUAUACUUa- -3'
miRNA:   3'- -UCAaUUUGGGA--UUCCGAAUGUGAAca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.