miRNA display CGI


Results 1 - 20 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28296 3' -41.6 NC_005902.1 + 173178 1.05 0.167365
Target:  5'- aCCCCUUAACUCCUAAGUUauAUACACg -3'
miRNA:   3'- -GGGGAAUUGAGGAUUCAAauUAUGUG- -5'
28296 3' -41.6 NC_005902.1 + 47235 0.76 0.998476
Target:  5'- aCCCUUUAACaCCUAAGcuauAUACACa -3'
miRNA:   3'- -GGGGAAUUGaGGAUUCaaauUAUGUG- -5'
28296 3' -41.6 NC_005902.1 + 67191 0.75 0.999343
Target:  5'- aCCCUUUAACUCCUAAGgcaucAAUaACAa -3'
miRNA:   3'- -GGGGAAUUGAGGAUUCaaa--UUA-UGUg -5'
28296 3' -41.6 NC_005902.1 + 145945 0.66 1
Target:  5'- aCCCUUUAACaUCUAAGcu--AUAUACu -3'
miRNA:   3'- -GGGGAAUUGaGGAUUCaaauUAUGUG- -5'
28296 3' -41.6 NC_005902.1 + 95456 0.86 0.861274
Target:  5'- aCCCCUUAACUCUUAAGguaugaUUAAUACcACa -3'
miRNA:   3'- -GGGGAAUUGAGGAUUCa-----AAUUAUG-UG- -5'
28296 3' -41.6 NC_005902.1 + 181227 0.85 0.892627
Target:  5'- gCCUUUAACUCCUAAGUU--AUAUACu -3'
miRNA:   3'- gGGGAAUUGAGGAUUCAAauUAUGUG- -5'
28296 3' -41.6 NC_005902.1 + 39157 0.82 0.955869
Target:  5'- gCCCCUUAACUCCUAaaaAGUugUUGAUAacaaaGCa -3'
miRNA:   3'- -GGGGAAUUGAGGAU---UCA--AAUUAUg----UG- -5'
28296 3' -41.6 NC_005902.1 + 91068 0.81 0.96727
Target:  5'- aCCCUUAACUCCUAAGgcauuAUugAUg -3'
miRNA:   3'- gGGGAAUUGAGGAUUCaaau-UAugUG- -5'
28296 3' -41.6 NC_005902.1 + 105998 0.78 0.993797
Target:  5'- aCUCUUUAACUCCUAAGUUguucucaaUGAUGCu- -3'
miRNA:   3'- -GGGGAAUUGAGGAUUCAA--------AUUAUGug -5'
28296 3' -41.6 NC_005902.1 + 136568 0.77 0.997764
Target:  5'- aCCCUUUAACaCCUAAGUU--AUAUACu -3'
miRNA:   3'- -GGGGAAUUGaGGAUUCAAauUAUGUG- -5'
28296 3' -41.6 NC_005902.1 + 49982 0.78 0.995493
Target:  5'- aCCCUUUAACUCCUAAGgcaucaucaaUAAUGCu- -3'
miRNA:   3'- -GGGGAAUUGAGGAUUCaa--------AUUAUGug -5'
28296 3' -41.6 NC_005902.1 + 25068 0.79 0.988881
Target:  5'- cCCCUUUAACUCCUAAagcguuGUUgacGAUACAUa -3'
miRNA:   3'- -GGGGAAUUGAGGAUU------CAAa--UUAUGUG- -5'
28296 3' -41.6 NC_005902.1 + 26205 0.89 0.735231
Target:  5'- aCCCCUUAACUCCUAAGgcaucAUugACg -3'
miRNA:   3'- -GGGGAAUUGAGGAUUCaaau-UAugUG- -5'
28296 3' -41.6 NC_005902.1 + 78731 0.78 0.996188
Target:  5'- aUCCCUUAACUCCUAAagcGUUgacaACGCu -3'
miRNA:   3'- -GGGGAAUUGAGGAUU---CAAauuaUGUG- -5'
28296 3' -41.6 NC_005902.1 + 16804 0.86 0.852797
Target:  5'- aCCCUUUAACUCCUAAGgcaucaUUGAUgACACa -3'
miRNA:   3'- -GGGGAAUUGAGGAUUCa-----AAUUA-UGUG- -5'
28296 3' -41.6 NC_005902.1 + 180751 0.8 0.981362
Target:  5'- aCCCCUUAAUUCCUAAGgugUUAucaACAa -3'
miRNA:   3'- -GGGGAAUUGAGGAUUCa--AAUua-UGUg -5'
28296 3' -41.6 NC_005902.1 + 34814 0.77 0.997764
Target:  5'- aCCCUUUAACaCCUAAGUU--AUAUACu -3'
miRNA:   3'- -GGGGAAUUGaGGAUUCAAauUAUGUG- -5'
28296 3' -41.6 NC_005902.1 + 161949 0.76 0.999181
Target:  5'- -aCUUUAACUCCUAAGgcaucgUUAAUaACACa -3'
miRNA:   3'- ggGGAAUUGAGGAUUCa-----AAUUA-UGUG- -5'
28296 3' -41.6 NC_005902.1 + 73623 0.86 0.852797
Target:  5'- aCCCUUUAACUCUUAAGUugUUGAUaACACa -3'
miRNA:   3'- -GGGGAAUUGAGGAUUCA--AAUUA-UGUG- -5'
28296 3' -41.6 NC_005902.1 + 136045 0.83 0.931393
Target:  5'- aCCCUUUAACUCCUAAGcu--AUAUACu -3'
miRNA:   3'- -GGGGAAUUGAGGAUUCaaauUAUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.