Results 1 - 20 of 182 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28296 | 3' | -41.6 | NC_005902.1 | + | 104717 | 0.66 | 1 |
Target: 5'- aUCCUUUAACUUUUAAGcu--AUAUACu -3' miRNA: 3'- -GGGGAAUUGAGGAUUCaaauUAUGUG- -5' |
|||||||
28296 | 3' | -41.6 | NC_005902.1 | + | 75752 | 0.66 | 1 |
Target: 5'- aCUCUUAACUCCUAAagcaccaucaaugACACa -3' miRNA: 3'- gGGGAAUUGAGGAUUcaaauua------UGUG- -5' |
|||||||
28296 | 3' | -41.6 | NC_005902.1 | + | 115525 | 0.66 | 1 |
Target: 5'- aUuuUUAGCUCCUAuuuGUUUAGUAgGa -3' miRNA: 3'- gGggAAUUGAGGAUu--CAAAUUAUgUg -5' |
|||||||
28296 | 3' | -41.6 | NC_005902.1 | + | 145945 | 0.66 | 1 |
Target: 5'- aCCCUUUAACaUCUAAGcu--AUAUACu -3' miRNA: 3'- -GGGGAAUUGaGGAUUCaaauUAUGUG- -5' |
|||||||
28296 | 3' | -41.6 | NC_005902.1 | + | 163447 | 0.66 | 1 |
Target: 5'- aCCCUUUAAaUCCUAAGgcu-AUAUAa -3' miRNA: 3'- -GGGGAAUUgAGGAUUCaaauUAUGUg -5' |
|||||||
28296 | 3' | -41.6 | NC_005902.1 | + | 83733 | 0.66 | 1 |
Target: 5'- aCCUUUUAACaCUUAAGU--GAUAUACa -3' miRNA: 3'- -GGGGAAUUGaGGAUUCAaaUUAUGUG- -5' |
|||||||
28296 | 3' | -41.6 | NC_005902.1 | + | 84932 | 0.66 | 1 |
Target: 5'- aCCCUUUAACaCUUAAGc--AAUAUACa -3' miRNA: 3'- -GGGGAAUUGaGGAUUCaaaUUAUGUG- -5' |
|||||||
28296 | 3' | -41.6 | NC_005902.1 | + | 95308 | 0.66 | 1 |
Target: 5'- aUCCUUUAACcCCUAAcaUUcAAUACACu -3' miRNA: 3'- -GGGGAAUUGaGGAUUcaAA-UUAUGUG- -5' |
|||||||
28296 | 3' | -41.6 | NC_005902.1 | + | 98635 | 0.66 | 1 |
Target: 5'- cCCCCUUcAUaCCUAAGcu--AUAUACa -3' miRNA: 3'- -GGGGAAuUGaGGAUUCaaauUAUGUG- -5' |
|||||||
28296 | 3' | -41.6 | NC_005902.1 | + | 135543 | 0.66 | 1 |
Target: 5'- aUCCUUUAACaCCUAAacuaGAUACACa -3' miRNA: 3'- -GGGGAAUUGaGGAUUcaaaUUAUGUG- -5' |
|||||||
28296 | 3' | -41.6 | NC_005902.1 | + | 57298 | 0.66 | 1 |
Target: 5'- aCUCUUUAACUCCUuGGcacaccaaUAAUGCAUu -3' miRNA: 3'- -GGGGAAUUGAGGAuUCaa------AUUAUGUG- -5' |
|||||||
28296 | 3' | -41.6 | NC_005902.1 | + | 146733 | 0.66 | 1 |
Target: 5'- aUCCUUUAACaCCUAAGcu--AUAUACa -3' miRNA: 3'- -GGGGAAUUGaGGAUUCaaauUAUGUG- -5' |
|||||||
28296 | 3' | -41.6 | NC_005902.1 | + | 48461 | 0.66 | 1 |
Target: 5'- aCCUUUUAGCUCCUAuGgcauuaUUGAUAacaGCg -3' miRNA: 3'- -GGGGAAUUGAGGAUuCa-----AAUUAUg--UG- -5' |
|||||||
28296 | 3' | -41.6 | NC_005902.1 | + | 148681 | 0.66 | 1 |
Target: 5'- aCUuuUUAACUCCUAAGgcaucucgaugACGCc -3' miRNA: 3'- -GGggAAUUGAGGAUUCaaauua-----UGUG- -5' |
|||||||
28296 | 3' | -41.6 | NC_005902.1 | + | 81110 | 0.66 | 1 |
Target: 5'- -aCCUUAACcCUUAAGUU--AUAUACu -3' miRNA: 3'- ggGGAAUUGaGGAUUCAAauUAUGUG- -5' |
|||||||
28296 | 3' | -41.6 | NC_005902.1 | + | 183213 | 0.66 | 1 |
Target: 5'- uUCUUUAGCUUUagAAGUUUcaAAUACACa -3' miRNA: 3'- gGGGAAUUGAGGa-UUCAAA--UUAUGUG- -5' |
|||||||
28296 | 3' | -41.6 | NC_005902.1 | + | 98938 | 0.66 | 1 |
Target: 5'- aCCCUUUAACcCCUAAGcu--AUAUAa -3' miRNA: 3'- -GGGGAAUUGaGGAUUCaaauUAUGUg -5' |
|||||||
28296 | 3' | -41.6 | NC_005902.1 | + | 174824 | 0.66 | 1 |
Target: 5'- uUCCUUAACUCUUAAGgcaucaucaaugACAUa -3' miRNA: 3'- gGGGAAUUGAGGAUUCaaauua------UGUG- -5' |
|||||||
28296 | 3' | -41.6 | NC_005902.1 | + | 181315 | 0.66 | 1 |
Target: 5'- aCCCCUU-AUUCCUAAG----AUAUAUu -3' miRNA: 3'- -GGGGAAuUGAGGAUUCaaauUAUGUG- -5' |
|||||||
28296 | 3' | -41.6 | NC_005902.1 | + | 98888 | 0.66 | 1 |
Target: 5'- ---aUUAACUCCUAAGUU--AUAUAUa -3' miRNA: 3'- ggggAAUUGAGGAUUCAAauUAUGUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home