miRNA display CGI


Results 21 - 40 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28296 3' -41.6 NC_005902.1 + 146733 0.66 1
Target:  5'- aUCCUUUAACaCCUAAGcu--AUAUACa -3'
miRNA:   3'- -GGGGAAUUGaGGAUUCaaauUAUGUG- -5'
28296 3' -41.6 NC_005902.1 + 104717 0.66 1
Target:  5'- aUCCUUUAACUUUUAAGcu--AUAUACu -3'
miRNA:   3'- -GGGGAAUUGAGGAUUCaaauUAUGUG- -5'
28296 3' -41.6 NC_005902.1 + 57298 0.66 1
Target:  5'- aCUCUUUAACUCCUuGGcacaccaaUAAUGCAUu -3'
miRNA:   3'- -GGGGAAUUGAGGAuUCaa------AUUAUGUG- -5'
28296 3' -41.6 NC_005902.1 + 135543 0.66 1
Target:  5'- aUCCUUUAACaCCUAAacuaGAUACACa -3'
miRNA:   3'- -GGGGAAUUGaGGAUUcaaaUUAUGUG- -5'
28296 3' -41.6 NC_005902.1 + 175516 0.67 1
Target:  5'- aCCCUUUAACUCUUAAGa--------- -3'
miRNA:   3'- -GGGGAAUUGAGGAUUCaaauuaugug -5'
28296 3' -41.6 NC_005902.1 + 25119 0.67 1
Target:  5'- aCCCUUUAACUCUaugcuauauAUACACa -3'
miRNA:   3'- -GGGGAAUUGAGGauucaaau-UAUGUG- -5'
28296 3' -41.6 NC_005902.1 + 173729 0.67 1
Target:  5'- aCCCUUUAACUUCUuu-----AUGCACc -3'
miRNA:   3'- -GGGGAAUUGAGGAuucaaauUAUGUG- -5'
28296 3' -41.6 NC_005902.1 + 166074 0.67 1
Target:  5'- aCCCUUUAACUUCUAAGa--------- -3'
miRNA:   3'- -GGGGAAUUGAGGAUUCaaauuaugug -5'
28296 3' -41.6 NC_005902.1 + 61620 0.67 1
Target:  5'- aCCCUUUAACaUCUAAGcu--AUAUACa -3'
miRNA:   3'- -GGGGAAUUGaGGAUUCaaauUAUGUG- -5'
28296 3' -41.6 NC_005902.1 + 50210 0.67 1
Target:  5'- aCCCUUUAACaCCUAAGcu--AUAUAUa -3'
miRNA:   3'- -GGGGAAUUGaGGAUUCaaauUAUGUG- -5'
28296 3' -41.6 NC_005902.1 + 6175 0.67 1
Target:  5'- aCUCUUUAACUCUUAAGgcaUUAuuuaagcuAUAUACa -3'
miRNA:   3'- -GGGGAAUUGAGGAUUCa--AAU--------UAUGUG- -5'
28296 3' -41.6 NC_005902.1 + 81927 0.67 1
Target:  5'- aCCCUUUAACUCCgcaacaucaUUAAUACu- -3'
miRNA:   3'- -GGGGAAUUGAGGauuca----AAUUAUGug -5'
28296 3' -41.6 NC_005902.1 + 111229 0.67 1
Target:  5'- aCCUUUUAACaCCUAAGcuauauAUACACu -3'
miRNA:   3'- -GGGGAAUUGaGGAUUCaaau--UAUGUG- -5'
28296 3' -41.6 NC_005902.1 + 155212 0.67 1
Target:  5'- aCCCUUUAACaUCUAAGcu--AUAUACa -3'
miRNA:   3'- -GGGGAAUUGaGGAUUCaaauUAUGUG- -5'
28296 3' -41.6 NC_005902.1 + 45212 0.67 1
Target:  5'- cUCCCaauACUUCUAAGUU--AUAUACu -3'
miRNA:   3'- -GGGGaauUGAGGAUUCAAauUAUGUG- -5'
28296 3' -41.6 NC_005902.1 + 97049 0.67 1
Target:  5'- aCUCUUUAACUCCUAAagc--AUAUACu -3'
miRNA:   3'- -GGGGAAUUGAGGAUUcaaauUAUGUG- -5'
28296 3' -41.6 NC_005902.1 + 104839 0.67 1
Target:  5'- aCCCaUUAACUCUUAAGgugUUGuUAUAUc -3'
miRNA:   3'- gGGG-AAUUGAGGAUUCa--AAUuAUGUG- -5'
28296 3' -41.6 NC_005902.1 + 51849 0.67 1
Target:  5'- aCCCUUUAACaUCUAAGcu--AUAUACa -3'
miRNA:   3'- -GGGGAAUUGaGGAUUCaaauUAUGUG- -5'
28296 3' -41.6 NC_005902.1 + 172815 0.67 1
Target:  5'- aCCCUUUAACaCCUAAGcu--AUAUAUg -3'
miRNA:   3'- -GGGGAAUUGaGGAUUCaaauUAUGUG- -5'
28296 3' -41.6 NC_005902.1 + 46255 0.67 1
Target:  5'- aCCCUUUAAaUCCUAAGgcuuAUAUAa -3'
miRNA:   3'- -GGGGAAUUgAGGAUUCaaauUAUGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.