miRNA display CGI


Results 21 - 40 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28296 3' -41.6 NC_005902.1 + 28082 0.69 1
Target:  5'- aCCCUUUAAUUCCUaAAGUaucaucaaugACACa -3'
miRNA:   3'- -GGGGAAUUGAGGA-UUCAaauua-----UGUG- -5'
28296 3' -41.6 NC_005902.1 + 30797 0.7 1
Target:  5'- aCCCUUUAACaUCUAAGcuauAUACGCu -3'
miRNA:   3'- -GGGGAAUUGaGGAUUCaaauUAUGUG- -5'
28296 3' -41.6 NC_005902.1 + 31416 0.69 1
Target:  5'- aCCCUUUAAUaCCUAAGcu--AUAUACa -3'
miRNA:   3'- -GGGGAAUUGaGGAUUCaaauUAUGUG- -5'
28296 3' -41.6 NC_005902.1 + 34814 0.77 0.997764
Target:  5'- aCCCUUUAACaCCUAAGUU--AUAUACu -3'
miRNA:   3'- -GGGGAAUUGaGGAUUCAAauUAUGUG- -5'
28296 3' -41.6 NC_005902.1 + 34873 0.75 0.999586
Target:  5'- aCCCUUUAAUUCCUAAGgcuUUAAaagAUACu -3'
miRNA:   3'- -GGGGAAUUGAGGAUUCa--AAUUa--UGUG- -5'
28296 3' -41.6 NC_005902.1 + 36096 0.73 0.999952
Target:  5'- aCCCUUUAACaCCUAAGgugUGGUugAUg -3'
miRNA:   3'- -GGGGAAUUGaGGAUUCaa-AUUAugUG- -5'
28296 3' -41.6 NC_005902.1 + 36901 0.81 0.96727
Target:  5'- gCCUUUUAACUCCUAAGgcUAGUAUAg -3'
miRNA:   3'- -GGGGAAUUGAGGAUUCaaAUUAUGUg -5'
28296 3' -41.6 NC_005902.1 + 37318 0.68 1
Target:  5'- aCCCUUUAACUCCau-GUUgucaucAAUaACACa -3'
miRNA:   3'- -GGGGAAUUGAGGauuCAAa-----UUA-UGUG- -5'
28296 3' -41.6 NC_005902.1 + 39157 0.82 0.955869
Target:  5'- gCCCCUUAACUCCUAaaaAGUugUUGAUAacaaaGCa -3'
miRNA:   3'- -GGGGAAUUGAGGAU---UCA--AAUUAUg----UG- -5'
28296 3' -41.6 NC_005902.1 + 40967 0.73 0.999935
Target:  5'- aCCCUUUAAUaCCUAAGcuauAUACACu -3'
miRNA:   3'- -GGGGAAUUGaGGAUUCaaauUAUGUG- -5'
28296 3' -41.6 NC_005902.1 + 42237 0.7 0.999999
Target:  5'- aCCUCUUAACaCCUAAGcu--AUAUACa -3'
miRNA:   3'- -GGGGAAUUGaGGAUUCaaauUAUGUG- -5'
28296 3' -41.6 NC_005902.1 + 42525 0.76 0.998987
Target:  5'- aCCCUUUAAaUCCUAAcGUUUGcUACACu -3'
miRNA:   3'- -GGGGAAUUgAGGAUU-CAAAUuAUGUG- -5'
28296 3' -41.6 NC_005902.1 + 44014 0.7 1
Target:  5'- aCCUUUUAACaCCUAAGcuauAUACACg -3'
miRNA:   3'- -GGGGAAUUGaGGAUUCaaauUAUGUG- -5'
28296 3' -41.6 NC_005902.1 + 45212 0.67 1
Target:  5'- cUCCCaauACUUCUAAGUU--AUAUACu -3'
miRNA:   3'- -GGGGaauUGAGGAUUCAAauUAUGUG- -5'
28296 3' -41.6 NC_005902.1 + 46255 0.67 1
Target:  5'- aCCCUUUAAaUCCUAAGgcuuAUAUAa -3'
miRNA:   3'- -GGGGAAUUgAGGAUUCaaauUAUGUg -5'
28296 3' -41.6 NC_005902.1 + 47235 0.76 0.998476
Target:  5'- aCCCUUUAACaCCUAAGcuauAUACACa -3'
miRNA:   3'- -GGGGAAUUGaGGAUUCaaauUAUGUG- -5'
28296 3' -41.6 NC_005902.1 + 48073 0.77 0.997764
Target:  5'- aCCCUUUAAUUCCUAAGgcaucauuaaUAAUGCAa -3'
miRNA:   3'- -GGGGAAUUGAGGAUUCaa--------AUUAUGUg -5'
28296 3' -41.6 NC_005902.1 + 48164 0.71 0.999995
Target:  5'- aCCCUUUAACUCCUaAAGUauuaucaaUGAUGCu- -3'
miRNA:   3'- -GGGGAAUUGAGGA-UUCAa-------AUUAUGug -5'
28296 3' -41.6 NC_005902.1 + 48222 0.68 1
Target:  5'- aUCCUUUAACUCUUAAGc----UACAUa -3'
miRNA:   3'- -GGGGAAUUGAGGAUUCaaauuAUGUG- -5'
28296 3' -41.6 NC_005902.1 + 48379 0.74 0.999885
Target:  5'- aCCCUUUAACaCCUAAGUUauGUACu- -3'
miRNA:   3'- -GGGGAAUUGaGGAUUCAAauUAUGug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.