miRNA display CGI


Results 21 - 40 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28296 3' -41.6 NC_005902.1 + 18749 0.78 0.9947
Target:  5'- aCCCUUUAACaCCUAAGUU--AUAUACa -3'
miRNA:   3'- -GGGGAAUUGaGGAUUCAAauUAUGUG- -5'
28296 3' -41.6 NC_005902.1 + 116828 0.78 0.9947
Target:  5'- aCCCUUUAACaUCUAAGUUauAUACACc -3'
miRNA:   3'- -GGGGAAUUGaGGAUUCAAauUAUGUG- -5'
28296 3' -41.6 NC_005902.1 + 88564 0.78 0.9947
Target:  5'- aCCCUUUAACaCCUAAGUU--AUAUACa -3'
miRNA:   3'- -GGGGAAUUGaGGAUUCAAauUAUGUG- -5'
28296 3' -41.6 NC_005902.1 + 49982 0.78 0.995493
Target:  5'- aCCCUUUAACUCCUAAGgcaucaucaaUAAUGCu- -3'
miRNA:   3'- -GGGGAAUUGAGGAUUCaa--------AUUAUGug -5'
28296 3' -41.6 NC_005902.1 + 76023 0.78 0.995493
Target:  5'- aCCCUUUAACUCCUAAGguauuaucaaUAAUGCu- -3'
miRNA:   3'- -GGGGAAUUGAGGAUUCaa--------AUUAUGug -5'
28296 3' -41.6 NC_005902.1 + 137833 0.78 0.995493
Target:  5'- aUCCUUUAGCUCCUAAGgcgucaucgaUGAUACAa -3'
miRNA:   3'- -GGGGAAUUGAGGAUUCaa--------AUUAUGUg -5'
28296 3' -41.6 NC_005902.1 + 90004 0.78 0.996188
Target:  5'- aCCCUUUAACaCCUAAGUUauAUAUGCa -3'
miRNA:   3'- -GGGGAAUUGaGGAUUCAAauUAUGUG- -5'
28296 3' -41.6 NC_005902.1 + 78731 0.78 0.996188
Target:  5'- aUCCCUUAACUCCUAAagcGUUgacaACGCu -3'
miRNA:   3'- -GGGGAAUUGAGGAUU---CAAauuaUGUG- -5'
28296 3' -41.6 NC_005902.1 + 111170 0.78 0.996188
Target:  5'- aCCCUUUAACUCCUAAugcGUugUUGAUgACGCu -3'
miRNA:   3'- -GGGGAAUUGAGGAUU---CA--AAUUA-UGUG- -5'
28296 3' -41.6 NC_005902.1 + 137005 0.77 0.997314
Target:  5'- aCCCCUUAACUCCUaGAGcUUUAucaACAa -3'
miRNA:   3'- -GGGGAAUUGAGGA-UUC-AAAUua-UGUg -5'
28296 3' -41.6 NC_005902.1 + 34814 0.77 0.997764
Target:  5'- aCCCUUUAACaCCUAAGUU--AUAUACu -3'
miRNA:   3'- -GGGGAAUUGaGGAUUCAAauUAUGUG- -5'
28296 3' -41.6 NC_005902.1 + 48073 0.77 0.997764
Target:  5'- aCCCUUUAAUUCCUAAGgcaucauuaaUAAUGCAa -3'
miRNA:   3'- -GGGGAAUUGAGGAUUCaa--------AUUAUGUg -5'
28296 3' -41.6 NC_005902.1 + 136568 0.77 0.997764
Target:  5'- aCCCUUUAACaCCUAAGUU--AUAUACu -3'
miRNA:   3'- -GGGGAAUUGaGGAUUCAAauUAUGUG- -5'
28296 3' -41.6 NC_005902.1 + 133834 0.77 0.997764
Target:  5'- aCCCUUUAACaCCUAAGU--GAUAUACc -3'
miRNA:   3'- -GGGGAAUUGaGGAUUCAaaUUAUGUG- -5'
28296 3' -41.6 NC_005902.1 + 116881 0.77 0.997764
Target:  5'- aCCCUUUAAUUCCUAAGacu-AUACAa -3'
miRNA:   3'- -GGGGAAUUGAGGAUUCaaauUAUGUg -5'
28296 3' -41.6 NC_005902.1 + 89961 0.77 0.998149
Target:  5'- aCCCUUUAACUCCUAAGgcaUUAucaACAa -3'
miRNA:   3'- -GGGGAAUUGAGGAUUCa--AAUua-UGUg -5'
28296 3' -41.6 NC_005902.1 + 47235 0.76 0.998476
Target:  5'- aCCCUUUAACaCCUAAGcuauAUACACa -3'
miRNA:   3'- -GGGGAAUUGaGGAUUCaaauUAUGUG- -5'
28296 3' -41.6 NC_005902.1 + 42525 0.76 0.998987
Target:  5'- aCCCUUUAAaUCCUAAcGUUUGcUACACu -3'
miRNA:   3'- -GGGGAAUUgAGGAUU-CAAAUuAUGUG- -5'
28296 3' -41.6 NC_005902.1 + 161949 0.76 0.999181
Target:  5'- -aCUUUAACUCCUAAGgcaucgUUAAUaACACa -3'
miRNA:   3'- ggGGAAUUGAGGAUUCa-----AAUUA-UGUG- -5'
28296 3' -41.6 NC_005902.1 + 149691 0.76 0.999181
Target:  5'- aCCCCUUAAC-CCUAAGgggUUAucgucaAUACAa -3'
miRNA:   3'- -GGGGAAUUGaGGAUUCa--AAU------UAUGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.