miRNA display CGI


Results 1 - 20 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28296 3' -41.6 NC_005902.1 + 173178 1.05 0.167365
Target:  5'- aCCCCUUAACUCCUAAGUUauAUACACg -3'
miRNA:   3'- -GGGGAAUUGAGGAUUCAAauUAUGUG- -5'
28296 3' -41.6 NC_005902.1 + 12825 0.89 0.724451
Target:  5'- aCCCUUUAACUCCUAAGUUauAUAUAUa -3'
miRNA:   3'- -GGGGAAUUGAGGAUUCAAauUAUGUG- -5'
28296 3' -41.6 NC_005902.1 + 26205 0.89 0.735231
Target:  5'- aCCCCUUAACUCCUAAGgcaucAUugACg -3'
miRNA:   3'- -GGGGAAUUGAGGAUUCaaau-UAugUG- -5'
28296 3' -41.6 NC_005902.1 + 73623 0.86 0.852797
Target:  5'- aCCCUUUAACUCUUAAGUugUUGAUaACACa -3'
miRNA:   3'- -GGGGAAUUGAGGAUUCA--AAUUA-UGUG- -5'
28296 3' -41.6 NC_005902.1 + 16804 0.86 0.852797
Target:  5'- aCCCUUUAACUCCUAAGgcaucaUUGAUgACACa -3'
miRNA:   3'- -GGGGAAUUGAGGAUUCa-----AAUUA-UGUG- -5'
28296 3' -41.6 NC_005902.1 + 95456 0.86 0.861274
Target:  5'- aCCCCUUAACUCUUAAGguaugaUUAAUACcACa -3'
miRNA:   3'- -GGGGAAUUGAGGAUUCa-----AAUUAUG-UG- -5'
28296 3' -41.6 NC_005902.1 + 181227 0.85 0.892627
Target:  5'- gCCUUUAACUCCUAAGUU--AUAUACu -3'
miRNA:   3'- gGGGAAUUGAGGAUUCAAauUAUGUG- -5'
28296 3' -41.6 NC_005902.1 + 49952 0.85 0.899794
Target:  5'- aCCCUUUAACUCCUAAGcu--AUAUACa -3'
miRNA:   3'- -GGGGAAUUGAGGAUUCaaauUAUGUG- -5'
28296 3' -41.6 NC_005902.1 + 136045 0.83 0.931393
Target:  5'- aCCCUUUAACUCCUAAGcu--AUAUACu -3'
miRNA:   3'- -GGGGAAUUGAGGAUUCaaauUAUGUG- -5'
28296 3' -41.6 NC_005902.1 + 119008 0.83 0.931393
Target:  5'- aCCCUUUAACUCCUAAGcu--AUAUACu -3'
miRNA:   3'- -GGGGAAUUGAGGAUUCaaauUAUGUG- -5'
28296 3' -41.6 NC_005902.1 + 87061 0.82 0.955869
Target:  5'- aCCCCUUAACUUCUAAGgcauugUUAAUgAUACu -3'
miRNA:   3'- -GGGGAAUUGAGGAUUCa-----AAUUA-UGUG- -5'
28296 3' -41.6 NC_005902.1 + 39157 0.82 0.955869
Target:  5'- gCCCCUUAACUCCUAaaaAGUugUUGAUAacaaaGCa -3'
miRNA:   3'- -GGGGAAUUGAGGAU---UCA--AAUUAUg----UG- -5'
28296 3' -41.6 NC_005902.1 + 91068 0.81 0.96727
Target:  5'- aCCCUUAACUCCUAAGgcauuAUugAUg -3'
miRNA:   3'- gGGGAAUUGAGGAUUCaaau-UAugUG- -5'
28296 3' -41.6 NC_005902.1 + 36901 0.81 0.96727
Target:  5'- gCCUUUUAACUCCUAAGgcUAGUAUAg -3'
miRNA:   3'- -GGGGAAUUGAGGAUUCaaAUUAUGUg -5'
28296 3' -41.6 NC_005902.1 + 79928 0.81 0.976411
Target:  5'- aCUCUUUAACUCCUAAGgcaucaUUAAUGCAa -3'
miRNA:   3'- -GGGGAAUUGAGGAUUCa-----AAUUAUGUg -5'
28296 3' -41.6 NC_005902.1 + 180751 0.8 0.981362
Target:  5'- aCCCCUUAAUUCCUAAGgugUUAucaACAa -3'
miRNA:   3'- -GGGGAAUUGAGGAUUCa--AAUua-UGUg -5'
28296 3' -41.6 NC_005902.1 + 90058 0.8 0.985491
Target:  5'- aCCCUUAACaCCUAAGUU--AUAUACa -3'
miRNA:   3'- gGGGAAUUGaGGAUUCAAauUAUGUG- -5'
28296 3' -41.6 NC_005902.1 + 25068 0.79 0.988881
Target:  5'- cCCCUUUAACUCCUAAagcguuGUUgacGAUACAUa -3'
miRNA:   3'- -GGGGAAUUGAGGAUU------CAAa--UUAUGUG- -5'
28296 3' -41.6 NC_005902.1 + 153086 0.79 0.990327
Target:  5'- aCCCCUUAACUCCUAA--UUGAcAUAUg -3'
miRNA:   3'- -GGGGAAUUGAGGAUUcaAAUUaUGUG- -5'
28296 3' -41.6 NC_005902.1 + 105998 0.78 0.993797
Target:  5'- aCUCUUUAACUCCUAAGUUguucucaaUGAUGCu- -3'
miRNA:   3'- -GGGGAAUUGAGGAUUCAA--------AUUAUGug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.